pgaA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''pgaA''  
''pgaA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ycdS, ECK1014, b1024, JW1010, hmsH''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ycdS, ECK1014, b1024, JW1010, hmsH''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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predicted outer membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted outer membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Biofilm adhesin polysaccharide PGA export; putative OM protein<ref name='LIB:EcoGene'/>
Biofilm adhesin polysaccharide PGA export; putative OM protein<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted outer membrane protein<ref name='LIB:Riley_2006'/>, B1024<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted outer membrane protein<ref name='LIB:Riley_2006'/>, B1024<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0006810 transport ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0042710 biofilm formation ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0022891 substrate-specific transmembrane transporter activity ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:pgaABCD|pgaABCD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:pgaABCD|pgaABCD]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=pgaA&loc=MG1655:1091512..1089089,W3110:1092711..1090288,DH10B:1145440..1143017 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1145440&end=1143017&gene=pgaA&aa=mysssrkrcpktkwalklltaaflaaspaaksavnnaydaliiearkgntqpalswfalksalsnnqiadwlqialwagqdkqvitvynryrhqqlpargyaavavayrnlqqwqnsltlwqkalslepqnkdyqrgqiltladaghydtalvklkqlnsgapdkanllaeayiyklagrhqdelramteslpenastqqypteyvqalrnnqlaaaiddanltpdiradihaelvrlsfmptrseseryaiadralaqyaaleilwhdnpdrtaqyqriqvdhlgalltrdrykdvishyqrlkktgqiippwgqywvasaylkdhqpkkaqsimtelfyhketiapdlsdeeladlfyshlesenypgaltvtqhtintsppflrlmgtptsipndtwlqghsflstvakysndlpqaemtarelaynapgnqglridyasvlqargwpraaenelkkaevieprninleveqawtaltlqewqqaavlthdvverepqdpgvvrlkravdvhnlaelriagstgidaegpdsgkhdvdlttivyspplkdnwrgfagfgyadgqfsegkgivrdwlagvewrsrniwleaeyaervfnhehkpgarlsgwydfndnwrigsqlerlshrvplramkngvtgnsaqayvrwyqnerrkygvswaftdfsdsnqrhevslegqeriwsspylivdflpslyyeqntehdtpyynpiktfdivpafeashllwrsyensweqifsagvgaswqkhygtdvvtqlgygqriswndvidagatlrwekrpydgdrehnlyvefdmtfrf Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pgaA+AND+escherichia+coli Pubmed(pgaA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=pgaA Textpresso(pgaA)]


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Revision as of 23:36, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

pgaA

Gene Synonym(s)

ycdS, ECK1014, b1024, JW1010, hmsH[1][2]

Product Desc.

predicted outer membrane protein[2][3]

Biofilm adhesin polysaccharide PGA export; putative OM protein[4]

Product Synonyms(s)

predicted outer membrane protein[1], B1024[2][1], YcdS[2][1], HmsH[2][1], PgaA[2][1]

Function from GO

Biological Process

Molecular Function

  • GO:0022891 substrate-specific transmembrane transporter activity (IMP)
Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pgaABCD[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(pgaA)    Textpresso(pgaA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


PgaA is homolgous to Y. pestis hemin storage protein HmsH, but is unable to complement hmsH mutations. PgaA is predicted to have a 26 aa signal peptide. CsrA regulon. PGA is oly-beta-1,6-N-acetyl-D-glucosamine.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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