pdxY:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''pdxY''  
''pdxY''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1632, b1636, JW1628, f287, ydgS''<ref name='LIB:Riley_2006'/>
''ECK1632, b1636, JW1628, f287, ydgS''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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pyridoxal kinase 2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
pyridoxal kinase 2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Pyridoxal kinase<ref name='LIB:EcoGene'/>
Pyridoxal kinase<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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pyridoxal kinase 2/pyridoxine kinase<ref name='LIB:Riley_2006'/>, B1636<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdgS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PdxY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
pyridoxal kinase 2/pyridoxine kinase<ref name='LIB:Riley_2006'/>, B1636<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdgS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PdxY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0042817 pyridoxal metabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0042823 pyridoxal phosphate biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0009443 pyridoxal 5'-phosphate salvage ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0042819 vitamin B6 biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Molecular Function'''
* GO:0008478 pyridoxal kinase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016301 kinase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:tyrS-pdxY|tyrS-pdxY]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:pdxH-tyrS-pdxY|pdxH-tyrS-pdxY]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:tyrS-pdxY|tyrS-pdxY]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:pdxH-tyrS-pdxY|pdxH-tyrS-pdxY]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=pdxY&loc=MG1655:1713913..1713050,W3110:1717603..1716740,DH10B:1804484..1803621,REL606:1693083..1692220 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1693083&end=1692220&gene=pdxY&aa=mmknilaiqshvvyghagnsaaefpmrrlganvwplntvqfsnhtqygkwtgcvmppshlteivqgiaaidklhtcdavlsgylgsaeqgehilgivrqvkaanpqakyfcdpvmghpekgcivapgvaefhvrhglpasdiiapnlveleilcehavnnveeavlaareliaqgpqivlvkhlaragysrdrfemllvtadeawhisrplvdfgmrqpvgvgdvtsglllvkllqgatlqealehvtaavyeimvttkamqeyelqvvaaqdriakpehyfsatkl Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pdxY+AND+escherichia+coli Pubmed(pdxY)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=pdxY Textpresso(pdxY)]


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Revision as of 23:36, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

pdxY

Gene Synonym(s)

ECK1632, b1636, JW1628, f287, ydgS[1]

Product Desc.

pyridoxal kinase 2[2][3]

Pyridoxal kinase[4]

Product Synonyms(s)

pyridoxal kinase 2/pyridoxine kinase[1], B1636[2][1], YdgS[2][1], PdxY[2][1]

Function from GO

Biological Process

Cellular Component

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): tyrS-pdxY[2], pdxH-tyrS-pdxY[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(pdxY)    Textpresso(pdxY)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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Involved in the salvage pathway of pyridoxal 5'-phosphate biosynthesis.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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