nrdR:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''nrdR''  
''nrdR''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ybaD, ECK0407, b0413, JW0403''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''ybaD, ECK0407, b0413, JW0403''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Nrd regulon repressor<ref name='LIB:EcoGene'/>
Nrd regulon repressor<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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conserved protein<ref name='LIB:Riley_2006'/>, B0413<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdR<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
conserved protein<ref name='LIB:Riley_2006'/>, B0413<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdR<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0003690 double-stranded DNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IEP])
'''Biological Process'''
* GO:0016481 negative regulation of transcription ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ybaD|ybaD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ybaD|ybaD]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=nrdR&loc=MG1655:432226..432675,W3110:432226..432675,DH10B:371557..372006 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=371557&end=372006&gene=nrdR&aa=mhcpfcfavdtkvidsrlvgegssvrrrrqclvcnerfttfevaelvmprvvksndvrepfneeklrsgmlralekrpvssddvemainhiksqlratgerevpskmignlvmeqlkkldkvayirfasvyrsfedikefgeeiarled Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nrdR+AND+escherichia+coli Pubmed(nrdR)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=nrdR Textpresso(nrdR)]


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Revision as of 23:39, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

nrdR

Gene Synonym(s)

ybaD, ECK0407, b0413, JW0403[1][2]

Product Desc.

conserved protein[3][2]

Nrd regulon repressor[4]

Product Synonyms(s)

conserved protein[1], B0413[3][1], YbaD[3][1], NrdR[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ybaD[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(nrdR)    Textpresso(nrdR)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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NrdR has been shown to regulate all three Nrd systems and to bind to the predicted NrdR binding sites (Torrents, 2007). Homologous to S. coelicolor NrdR (Borovok, 2004). Predicted binding sites has been reported for the nrdAB, nrdDG, and nrdHIEF operons (Rodionova, 2005). This corresponds to putative TF Binding SIte Cluster E581 for nrdD and nrdA (Qin, 2003). Binds TrxA (Kumar, 2004). First gene in putative nrdR-ribDE-nusB operon. Also refered to as nrdR in an unpublished comparative analysis (Borovok, 2005, in GenBank AM076828).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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