nirB:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''nirB''  
''nirB''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3353, b3365, JW3328''<ref name='LIB:Riley_2006'/>
''ECK3353, b3365, JW3328''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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nitrite reductase, large subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
nitrite reductase, large subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Nitrite reductase [NAD(P)H] subunit<ref name='LIB:EcoGene'/>
Nitrite reductase [NAD(P)H] subunit<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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nitrite reductase, large subunit, NAD(P)H-binding<ref name='LIB:Riley_2006'/>, B3365<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NirB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
nitrite reductase, large subunit, NAD(P)H-binding<ref name='LIB:Riley_2006'/>, B3365<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NirB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005506 iron ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0020037 heme binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0050660 FAD binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0050661 NADP binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0051539 4 iron, 4 sulfur cluster binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0009061 anaerobic respiration ([http://www.geneontology.org/GO.evidence.shtml IEP])
'''Cellular Component'''
* GO:0009344 nitrite reductase complex (NAD(P)H) ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:nirBDC-cysG|nirBDC-cysG]]<ref name='LIB:EcoCyc10.6'/>, OP00062, nirB, nirBDC  
transcription unit(s): [[:Category:Txn_unit:nirBDC-cysG|nirBDC-cysG]]<ref name='LIB:EcoCyc10.6'/>, OP00062, nirB, nirBDC  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=nirB&loc=MG1655:3492033..3494576,W3110:4146405..4143862,REL606:3421916..3424459,DH10B:3589778..3592321 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3589778&end=3592321&gene=nirB&aa=mskvrlaiigngmvghrfiedlldksdaanfditvfceepriaydrvhlssyfshhtaeelslvregfyekhgikvlvgeraitinrqekvihssagrtvfydklimatgsypwippikgsdtqdcfvyrtiedlnaiescarrskrgavvgggllgleaagalknlgiethviefapmlmaeqldqmggeqlrrkiesmgvrvhtskntleivqegvearktmrfadgselevdfivfstgirprdklatqcgldvaprggivindscqtsdpdiyaigecaswnnrvfglvapgykmaqvavdhilgsenafegadlsaklkllgvdvggigdahgrtpgarsyvyldeskeiykrlivsednktllgavlvgdtsdygnllqlvlnaielpenpdslilpahsgsgkpsigvdklpdsaqicscfdvtkgdliaainkgchtvaalkaetkagtgcggciplvtqvlnaelakqgievnnnlcehfaysrqelfhlirvegiktfeellakhgkgygcevckptvgsllascwneyilkpehtplqdsndnflaniqkdgtysviprspggeitpeglmavgriarefnlytkitgsqrlamfgaqkddlpeiwrqlieagfetghayakalrmaktcvgstwcrygvgdsvglgvelenrykgirtphkmkfgvsgctrecseaqgkdvgiiatekgwnlyvcgnggmkprhadllaadidretlikyldrfmmfyirtadkltrtapwlenleggidylkaviiddklglnahleeemarlreavlcewtetvntpsaqtrfkhfinsdkrdpnvqmvpereqhrpatpyeripvtlvedna Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nirB+AND+escherichia+coli Pubmed(nirB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=nirB Textpresso(nirB)]


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Revision as of 23:39, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

nirB

Gene Synonym(s)

ECK3353, b3365, JW3328[1]

Product Desc.

nitrite reductase, large subunit[2][3];

Component of dimer of large subunit of nitrite reductase[2][3]; nitrite reductase[2][3]

Nitrite reductase [NAD(P)H] subunit[4]

Product Synonyms(s)

nitrite reductase, large subunit, NAD(P)H-binding[1], B3365[2][1], NirB[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nirBDC-cysG[2], OP00062, nirB, nirBDC

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(nirB)    Textpresso(nirB)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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