lysS:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''lysS''  
''lysS''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2885, b2890, JW2858, asuD, herC''<ref name='LIB:Riley_2006'/>
''ECK2885, b2890, JW2858, asuD, herC''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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lysyl tRNA synthetase (LysRSs), constitutive<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
lysyl tRNA synthetase (LysRSs), constitutive<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Lysine--tRNA ligase, constitutive<ref name='LIB:EcoGene'/>
Lysine--tRNA ligase, constitutive<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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lysine tRNA synthetase, constitutive<ref name='LIB:Riley_2006'/>, B2890<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HerC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AsuD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LysS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
lysine tRNA synthetase, constitutive<ref name='LIB:Riley_2006'/>, B2890<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HerC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AsuD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LysS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0016874 ligase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0004824 lysine-tRNA ligase activity ([http://www.geneontology.org/GO.evidence.shtml IGI])
'''Cellular Component'''
* GO:0005624 membrane fraction ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005739 mitochondrion ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005829 cytosol ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IC])
'''Biological Process'''
* GO:0006418 tRNA aminoacylation for protein translation ([http://www.geneontology.org/GO.evidence.shtml IGI])
* GO:0006430 lysyl-tRNA aminoacylation ([http://www.geneontology.org/GO.evidence.shtml IGI])
* GO:0006412 translation ([http://www.geneontology.org/GO.evidence.shtml IGI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:prfB-lysS|prfB-lysS]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:prfB-lysS|prfB-lysS]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=lysS&loc=MG1655:3033196..3031679,W3110:3033830..3032313,REL606:2920927..2919410,DH10B:3127066..3125549 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3127066&end=3125549&gene=lysS&aa=mseqhaqgadavvdlnnelktrreklanlreqgiafpndfrrdhtsdqlhaefdgkeneelealnievavagrmmtrrimgkasfvtlqdvggriqlyvarddlpegvyneqfkkwdlgdilgakgklfktktgelsihctelrlltkalrplpdkfhglqdqearyrqryldlisndesrntfkvrsqilsgirqfmvnrgfmevetpmmqvipggaaarpfithhnaldldmylriapelylkrlvvggfervfeinrnfrnegisvrhnpeftmmelymayadykdlielteslfrtlaqdilgktevtygdvtldfgkpfekltmreaikkyrpetdmadldnfdsakaiaesigihvekswglgrivteifeevaeahliqptfiteypaevsplarrndvnpeitdrfeffiggreigngfselndaedqaqrfldqvaakdagddeamfydedyvtalehglpptaglgigidrmvmlftnshtirdvilfpamrpvk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lysS+AND+escherichia+coli Pubmed(lysS)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=lysS Textpresso(lysS)]


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Revision as of 23:45, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

lysS

Gene Synonym(s)

ECK2885, b2890, JW2858, asuD, herC[1]

Product Desc.

lysyl tRNA synthetase (LysRSs), constitutive[2][3];

Component of lysyl tRNA synthetase (LysRSs), constitutive[2][3]


Lysine--tRNA ligase, constitutive[4]

Product Synonyms(s)

lysine tRNA synthetase, constitutive[1], B2890[2][1], HerC[2][1], AsuD[2][1], LysS[2][1]

Function from GO

Molecular Function

Cellular Component

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): prfB-lysS[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(lysS)    Textpresso(lysS)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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Mutants have reduced OM vesiculation (McBroom, 2006).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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