lsrA:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''lsrA'' | ''lsrA'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ego, ECK1506, b1513, JW1506, ydeX''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ego, ECK1506, b1513, JW1506, ydeX''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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LsrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | LsrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
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Autoinducer-2 (AI-2) uptake; essential for aerobic growth; upregulated in biofilms<ref name='LIB:EcoGene'/> | Autoinducer-2 (AI-2) uptake; essential for aerobic growth; upregulated in biofilms<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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fused AI2 transporter subunits of ABC superfamily: ATP-binding components<ref name='LIB:Riley_2006'/>, B1513<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ego<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | fused AI2 transporter subunits of ABC superfamily: ATP-binding components<ref name='LIB:Riley_2006'/>, B1513<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ego<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:lsrACDBFG|lsrACDBFG]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:lsrACDBFG|lsrACDBFG]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=lsrA&loc=MG1655:1599514..1601049,W3110:1603204..1604739,DH10B:1689139..1690674 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1689139&end=1690674&gene=lsrA&aa=mqtsdtralpllcarsvykqysgvnvlkgidftlhqgevhallggngagkstlmkiiagitpadsgtleiegnnyvrltpvhahqlgiylvpqepllfpslsikenilfglakkqlsmqkmknllaalgcqfdlhslagsldvadrqmveilrglmrdsrilildeptasltpaeterlfsrlqellatgvgivfishklpeirqiadrisvmrdgtialsgktselstddiiqaitpavrekslsasqklwlelpgnrpqhaagtpvltlenltgegfrnvsltlnageilglaglvgagrtelaetlyglrtlrggrimlngkeinklstgerllrglvylpedrqssglnldaslawnvcalthnlrgfwaktakdnatleryrralnikfnqpeqaartlsggnqqkiliakcleaspqvlivdeptrgvdvsarndiyqllrsiaaqnvavllissdleeielmadrvyvmhqgeithsalterdinvetimrvafgdsqrqeasc Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lsrA+AND+escherichia+coli Pubmed(lsrA)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=lsrA Textpresso(lsrA)] | |||
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Revision as of 23:46, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
lsrA |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
Component of LsrA/LsrC/LsrD/LsrB ABC transporter[2][3] Autoinducer-2 (AI-2) uptake; essential for aerobic growth; upregulated in biofilms[4] |
| Product Synonyms(s) |
fused AI2 transporter subunits of ABC superfamily: ATP-binding components[1], B1513[2][1], YdeX[2][1], Ego[2][1] |
| Function from GO |
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
LsrA is paralogous to ribose transport ATPase RbsA. LsrA is in an operon regulated by LsrR and LuxS, through AI-2. Biofilm microarray result was validated with RT-PCR. CRP regulon.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.