kdsD:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''kdsD'' | ''kdsD'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK3186, b3197, JW3164, yrbH''<ref name='LIB:Riley_2006'/> | ''ECK3186, b3197, JW3164, yrbH''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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arabinose 5-phosphate isomerase<ref name='LIB:EcoCyc10.6'/>; D-arabinose 5-phosphate isomerase<ref name='LIB:EcoCyc11.1'/>; | arabinose 5-phosphate isomerase<ref name='LIB:EcoCyc10.6'/>; D-arabinose 5-phosphate isomerase<ref name='LIB:EcoCyc11.1'/>; | ||
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D-arabinose 5-phosphate isomerase; LPS biosynthesis<ref name='LIB:EcoGene'/> | D-arabinose 5-phosphate isomerase; LPS biosynthesis<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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D-arabinose 5-phosphate isomerase<ref name='LIB:Riley_2006'/>, KdsD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B3197<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YrbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | D-arabinose 5-phosphate isomerase<ref name='LIB:Riley_2006'/>, KdsD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B3197<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YrbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0019146 arabinose-5-phosphate isomerase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:yrbG-kdsD|yrbG-kdsD]]<ref name='LIB:EcoCyc11.1'/> | transcription unit(s): [[:Category:Txn_unit:yrbG-kdsD|yrbG-kdsD]]<ref name='LIB:EcoCyc11.1'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=kdsD&loc=MG1655:3339288..3340274,W3110:3341121..3342107,DH10B:3437033..3438019,REL606:3276501..3277487 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3276501&end=3277487&gene=kdsD&aa=mshvelqpgfdfqqagkevlaiereclaeldqyinqnftlacekmfwckgkvvvmgmgksghigrkmaatfastgtpsffvhpgeaahgdlgmvtpqdvviaisnsgesseitalipvlkrlhvplicitgrpessmaraadvhlcvkvakeacplglaptssttatlvmgdalavallkargftaedfalshpggalgrklllrvndimhtgdeiphvkktaslrdallevtrknlgmtvicddnmmiegiftdgdlrrvfdmgvdvrqlsiadvmtpggirvrpgilavealnlmqsrhitsvmvadgdhllgvlhmhdllragvv Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=kdsD+AND+escherichia+coli Pubmed(kdsD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=kdsD Textpresso(kdsD)] | |||
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Revision as of 23:48, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
kdsD |
|---|---|
| Gene Synonym(s) |
ECK3186, b3197, JW3164, yrbH[1] |
| Product Desc. |
arabinose 5-phosphate isomerase[2]; D-arabinose 5-phosphate isomerase[3]; Component of D-arabinose 5-phosphate isomerase[3] D-arabinose 5-phosphate isomerase; LPS biosynthesis[4] |
| Product Synonyms(s) |
D-arabinose 5-phosphate isomerase[1], KdsD[2][1], B3197[2][1], YrbH[2][1] |
| Function from GO |
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
KdsD is homologous to GutQ and KpsF. A kdsD qutQ double mutant is a synthetic lethal.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.