kdgK:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''kdgK''  
''kdgK''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3511, b3526, JW5668, yhjI''<ref name='LIB:Riley_2006'/>
''ECK3511, b3526, JW5668, yhjI''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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2-keto-3-deoxygluconokinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
2-keto-3-deoxygluconokinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Ketodeoxygluconokinase<ref name='LIB:EcoGene'/>
Ketodeoxygluconokinase<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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ketodeoxygluconokinase<ref name='LIB:Riley_2006'/>, B3526<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhjI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdgK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ATP:2-dehydro-3-deoxy-D-gluconate 6-phosphotransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, 3-deoxy-2-oxo-D-gluconate kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KDG kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
ketodeoxygluconokinase<ref name='LIB:Riley_2006'/>, B3526<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhjI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdgK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ATP:2-dehydro-3-deoxy-D-gluconate 6-phosphotransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, 3-deoxy-2-oxo-D-gluconate kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KDG kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Molecular Function'''
* GO:0008673 2-dehydro-3-deoxygluconokinase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0019698 D-galacturonate catabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0042840 D-glucuronate catabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:kdgK|kdgK]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:kdgK|kdgK]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=kdgK&loc=MG1655:3677442..3678371,W3110:3960996..3960067,REL606:3608911..3609840,DH10B:3775187..3776116 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3775187&end=3776116&gene=kdgK&aa=mfksdaartrqrlsarkgrtlppgrgkfphsttesfrntfwlkkimehcfnmvdqqtttaqtnanflqirfttmskkiavigecmielsekgadvkrgfggdtlntsvyiarqvdpaaltvhyvtalgtdsfsqqmldawhgenvdtsltqrmenrlpglyyietdstgertfyywrneaaakfwleseqsaaiceelanfdylylsgislailsptsrekllsllrecranggkvifdnnyrprlwaskeetqqvyqqmlectdiafltlddedalwgqqpvedviarthnagvkevvvkrgadsclvsiageglvdvpavklpkekvidttaagdsfsagylavrltggsaedaakrghltastviqyrgaiipreampa Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=kdgK+AND+escherichia+coli Pubmed(kdgK)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=kdgK Textpresso(kdgK)]


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Revision as of 23:48, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

kdgK

Gene Synonym(s)

ECK3511, b3526, JW5668, yhjI[1]

Product Desc.

2-keto-3-deoxygluconokinase[2][3]

Ketodeoxygluconokinase[4]

Product Synonyms(s)

ketodeoxygluconokinase[1], B3526[2][1], YhjI[2][1], KdgK[2][1], ATP:2-dehydro-3-deoxy-D-gluconate 6-phosphotransferase[2][1], 3-deoxy-2-oxo-D-gluconate kinase[2][1], KDG kinase[2][1]

Function from GO

Cellular Component

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): kdgK[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(kdgK)    Textpresso(kdgK)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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KdgK is elevated 3-5X during growth at 4C (enabled by Oleispira antarctica Cpn10/60 transgene). HT_Cmplx44_Mem: GlpC+KdgK+YahK.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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