ispF:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''ispF'' | ''ispF'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2741, b2746, JW2716, ygbB''<ref name='LIB:Riley_2006'/> | ''ECK2741, b2746, JW2716, ygbB''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
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2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECP) synthase; alternative nonmevalonate (DXP) pathway for terpenoid biosynthesis; essential gene; trimeric<ref name='LIB:EcoGene'/> | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECP) synthase; alternative nonmevalonate (DXP) pathway for terpenoid biosynthesis; essential gene; trimeric<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase<ref name='LIB:Riley_2006'/>, B2746<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgbB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IspF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase<ref name='LIB:Riley_2006'/>, B2746<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgbB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IspF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
* GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
'''Biological Process''' | |||
* GO:0006744 ubiquinone biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): | transcription unit(s): | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ispF&loc=MG1655:2869802..2869323,W3110:2870436..2869957,DH10B:2962344..2961865,REL606:2766641..2766162 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2766641&end=2766162&gene=ispF&aa=mrighgfdvhafggegpiiiggvripyekgllahsdgdvalhaltdallgaaalgdigklfpdtdpafkgadsrellreawrriqakgytlgnvdvtiiaqapkmlphipqmrvfiaedlgchmddvnvkattteklgftgrgegiaceavallikatk Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ispF+AND+escherichia+coli Pubmed(ispF)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ispF Textpresso(ispF)] | |||
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Revision as of 00:28, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ispF |
|---|---|
| Gene Synonym(s) |
ECK2741, b2746, JW2716, ygbB[1] |
| Product Desc. |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase[2][3]; Component of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase[3] 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECP) synthase; alternative nonmevalonate (DXP) pathway for terpenoid biosynthesis; essential gene; trimeric[4] |
| Product Synonyms(s) |
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase[1], B2746[2][1], YgbB[2][1], IspF[2][1] |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.