hpf:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''hpf'' | ''hpf'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''yhbH, ECK3192, b3203, JW3170, rp5M''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/> | ''yhbH, ECK3192, b3203, JW3170, rp5M''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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probable sigma-54 modulation protein<ref name='LIB:EcoCyc10.6'/>; predicted ribosome-associated, sigma 54 modulation protein<ref name='LIB:EcoCyc11.1'/> | probable sigma-54 modulation protein<ref name='LIB:EcoCyc10.6'/>; predicted ribosome-associated, sigma 54 modulation protein<ref name='LIB:EcoCyc11.1'/> | ||
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Ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S); induced in stationary phase; raiA paralog has opposite effect on 70S dimers<ref name='LIB:EcoGene'/> | Ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S); induced in stationary phase; raiA paralog has opposite effect on 70S dimers<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted ribosome-associated, sigma 54 modulation protein<ref name='LIB:Riley_2006'/>, B3203<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hpf<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> | predicted ribosome-associated, sigma 54 modulation protein<ref name='LIB:Riley_2006'/>, B3203<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hpf<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | |||
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Non-essential <ref name=PMID:17277072/> | Non-essential <ref name=PMID:17277072/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Expression | ||
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transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:rpoN-yhbH-ptsN-yhbJ-npr|rpoN-yhbH-ptsN-yhbJ-npr]]<ref name='LIB:EcoCyc10.6'/>, rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO | transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:rpoN-yhbH-ptsN-yhbJ-npr|rpoN-yhbH-ptsN-yhbJ-npr]]<ref name='LIB:EcoCyc10.6'/>, rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=hpf&loc=MG1655:3344195..3344482,W3110:3346028..3346315,DH10B:3441940..3442227 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3441940&end=3442227&gene=hpf&aa=mqlnitgnnveitealrefvtakfakleqyfdrinqvyvvlkvekvthtsdatlhvnggeihasaegqdmyaaidglidklarqltkhkdklkqh Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hpf+AND+escherichia+coli Pubmed(hpf)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=hpf Textpresso(hpf)] | |||
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Revision as of 23:51, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
hpf |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
probable sigma-54 modulation protein[3]; predicted ribosome-associated, sigma 54 modulation protein[2] Ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S); induced in stationary phase; raiA paralog has opposite effect on 70S dimers[4] |
| Product Synonyms(s) |
predicted ribosome-associated, sigma 54 modulation protein[1], B3203[3][1], YhbH[3][1], Hpf[2][1] |
| Function from GO |
Molecular Function
|
| Knock-Out Phenotype |
Non-essential [5] |
| Regulation/Expression |
transcription unit(s): lptB-rpoN-yhbH-ptsN-yhbJ[3], yhbG-rpoN-yhbH-ptsN-yhbJ, rpoN-yhbH-ptsN-yhbJ-npr[3], rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Homologous to RpoN modulators. Induced by AI-2 pheromone. The rpoN operon contains rpoN-hpf-ptsN-yhbJ-npr.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Bubunenko, M et al. (2007) Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli. J. Bacteriol. 189 2844-53 PubMed