hcaF:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''hcaF''  
''hcaF''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2536, b2539, JW2523, hcaA2, digB, phdC2, hcaA, yfhV''<ref name='LIB:Riley_2006'/>
''ECK2536, b2539, JW2523, hcaA2, digB, phdC2, hcaA, yfhV''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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3-phenylpropionate dioxygenase, &beta; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
3-phenylpropionate dioxygenase, &beta; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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3-phenylpropionate/cinnamic acid dioxygenase, beta subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway<ref name='LIB:EcoGene'/>
3-phenylpropionate/cinnamic acid dioxygenase, beta subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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3-phenylpropionate dioxygenase, small (beta) subunit<ref name='LIB:Riley_2006'/>, B2539<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DigB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaA2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, 3-phenylpropionate dioxygenase, small subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
3-phenylpropionate dioxygenase, small (beta) subunit<ref name='LIB:Riley_2006'/>, B2539<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DigB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaA2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, 3-phenylpropionate dioxygenase, small subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:hcaEFCBD|hcaEFCBD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:hcaEFCBD|hcaEFCBD]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=hcaF&loc=MG1655:2668412..2668930,W3110:2669046..2669564,REL606:2591089..2591607,DH10B:2760177..2760695 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2760177&end=2760695&gene=hcaF&aa=msaqvslelhhrisqflfheasllddwkfrdwlaqldeeirytmrttvnaqtrdrrkgvqppttwifndtkdqlerriarletgmawaeeppsrtrhlisncqisetdipnvfavrvnyllyraqkerdetfyvgtrfdkvrrleddnwrllerdivldqavitshnlsvlf Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hcaF+AND+escherichia+coli Pubmed(hcaF)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=hcaF Textpresso(hcaF)]


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Revision as of 23:53, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

hcaF

Gene Synonym(s)

ECK2536, b2539, JW2523, hcaA2, digB, phdC2, hcaA, yfhV[1]

Product Desc.

3-phenylpropionate dioxygenase, β subunit[2][3];

Component of 3-phenylpropionate dioxygenase system[2][3]; 3-phenylpropionate dioxygenase system[2][3]

3-phenylpropionate/cinnamic acid dioxygenase, beta subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway[4]

Product Synonyms(s)

3-phenylpropionate dioxygenase, small (beta) subunit[1], B2539[2][1], HcaA[2][1], YfhV[2][1], DigB[2][1], HcaF[2][1], HcaA2[2][1], 3-phenylpropionate dioxygenase, small subunit[2][1]

Function from GO
Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hcaEFCBD[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(hcaF)    Textpresso(hcaF)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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Hydrocinnamic acid is a synonym for 3-phenylpropionic acid.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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