gnsB:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''gnsB'' | ''gnsB'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1544, b1550, JW5253, ydfY''<ref name='LIB:Riley_2006'/> | ''ECK1544, b1550, JW5253, ydfY''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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Qin prophage; predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | Qin prophage; predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Multicopy suppressor of secG(Cs) and fabA6(Ts), Qin prophage; overexpression increases unsaturated fatty acid content of phospholipids; gnsA paralog<ref name='LIB:EcoGene'/> | Multicopy suppressor of secG(Cs) and fabA6(Ts), Qin prophage; overexpression increases unsaturated fatty acid content of phospholipids; gnsA paralog<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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Qin prophage; predicted protein<ref name='LIB:Riley_2006'/>, B1550<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GnsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdfY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | Qin prophage; predicted protein<ref name='LIB:Riley_2006'/>, B1550<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GnsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdfY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:gnsB|gnsB]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:gnsB|gnsB]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=gnsB&loc=MG1655:1635806..1635633,W3110:1639496..1639323,DH10B:1725431..1725258,REL606:1609973..1609800 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1609973&end=1609800&gene=gnsB&aa=mmnienlktkaeadiseyitkkiielkkktgkevtsiqftarekmtglesydvkinli Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gnsB+AND+escherichia+coli Pubmed(gnsB)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=gnsB Textpresso(gnsB)] | |||
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Revision as of 23:54, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
gnsB |
|---|---|
| Gene Synonym(s) |
ECK1544, b1550, JW5253, ydfY[1] |
| Product Desc. |
Qin prophage; predicted protein[2][3] Multicopy suppressor of secG(Cs) and fabA6(Ts), Qin prophage; overexpression increases unsaturated fatty acid content of phospholipids; gnsA paralog[4] |
| Product Synonyms(s) |
Qin prophage; predicted protein[1], B1550[2][1], GnsB[2][1], YdfY[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The Escherichia coli CFT073 gnsB ortholog is annotated as an 88 amino acid protein due to extension of N-terminus. However, homology does not extend into upstream region and K-12 has an in-frame stop in N-terminal extension region. Therefore GnsB of CFT073 is probably also 57 aa long. Conservation with GnsA paralog and presence of excellent gnsB RBS also supports this conclusion. ALT_INIT of -1 is indicated to allow acceptable spacing between the ATG and the RBS.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.