garL:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''garL''  
''garL''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3114, b3126, JW3095, yhaF, yhaF'''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK3114, b3126, JW3095, yhaF, yhaF'''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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2-dehydro-3-deoxygalactarate aldolase; homohexameric<ref name='LIB:EcoGene'/>
2-dehydro-3-deoxygalactarate aldolase; homohexameric<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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alpha-dehydro-beta-deoxy-D-glucarate aldolase<ref name='LIB:Riley_2006'/>, B3126<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhaF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GarL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
alpha-dehydro-beta-deoxy-D-glucarate aldolase<ref name='LIB:Riley_2006'/>, B3126<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhaF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GarL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0008672 2-dehydro-3-deoxyglucarate aldolase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016830 carbon-carbon lyase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0019582 D-galactarate catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0042838 D-glucarate catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0019394 glucarate catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:garPLRK-rnpB|garPLRK-rnpB]]<ref name='LIB:EcoCyc10.6'/>, yhaUFED-rnpB  
transcription unit(s): [[:Category:Txn_unit:garPLRK-rnpB|garPLRK-rnpB]]<ref name='LIB:EcoCyc10.6'/>, yhaUFED-rnpB  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=garL&loc=MG1655:3271579..3270809,W3110:3273412..3272642,DH10B:3369324..3368554,REL606:3206486..3205716 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3206486&end=3205716&gene=garL&aa=mnndvfpnkfkaalaakqvqigcwsalsnpistevlglagfdwlvldgehapndistfipqlmalkgsasapvvrvptnepviikrlldigfynflipfvetkeeaelavastryppegirgvsvshranmfgtvadyfaqsnknitilvqiesqqgvdnvdaiaategvdgifvgpsdlaaalghlgnashpdvqkaiqhifnrasahgkpsgilapveadarrylewgatfvavgsdlgvfrsatqkladtfkk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=garL+AND+escherichia+coli Pubmed(garL)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=garL Textpresso(garL)]


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Revision as of 23:56, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

garL

Gene Synonym(s)

ECK3114, b3126, JW3095, yhaF, yhaF'[1][2]

Product Desc.

2-dehydro-3-deoxygalactarate aldolase; homohexameric[3]

Product Synonyms(s)

alpha-dehydro-beta-deoxy-D-glucarate aldolase[1], B3126[2][1], YhaF[2][1], GarL[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): garPLRK-rnpB[2], yhaUFED-rnpB

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(garL)    Textpresso(garL)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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