fimC:Quickview: Difference between revisions
Jump to navigation
Jump to search
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''fimC'' | ''fimC'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK4307, b4316, JW4279, pil, pilB, pilC''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ECK4307, b4316, JW4279, pil, pilB, pilC''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
periplasmic chaperone, required for type 1 fimbriae<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | periplasmic chaperone, required for type 1 fimbriae<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
| Line 41: | Line 41: | ||
Periplasmic chaperone for type 1 fimbriae; FimCD chaperone-usher transport<ref name='LIB:EcoGene'/> | Periplasmic chaperone for type 1 fimbriae; FimCD chaperone-usher transport<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
chaperone, periplasmic product<ref name='LIB:Riley_2006'/>, B4316 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FimC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | chaperone, periplasmic product<ref name='LIB:Riley_2006'/>, B4316 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FimC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:fimAICDFGH|fimAICDFGH]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:fimAICDFGH|fimAICDFGH]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=fimC&loc=MG1655:4542327..4543052,W3110:4548984..4549709,REL606:4525218..4525943 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4525218&end=4525943&gene=fimC&aa=msnknvnvrksqeitfcllagilmfmammvagraeagvalgatrviypagqkqeqlavtnndenstyliqswvenadgvkdgrfivtpplfamkgkkentlrildatnnqlpqdreslfwmnvkaipsmdkskltentlqlaiisriklyyrpaklalppdqaaeklrfrrsansltlinptpyyltvtelnagtrvlenalvppmgestvklpsdagsnityrtindygaltpkmtgvme Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=fimC+AND+escherichia+coli Pubmed(fimC)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=fimC Textpresso(fimC)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 00:00, 22 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
fimC |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
periplasmic chaperone, required for type 1 fimbriae[2][3] Periplasmic chaperone for type 1 fimbriae; FimCD chaperone-usher transport[4] |
| Product Synonyms(s) |
chaperone, periplasmic product[1], B4316 product[2][1], PilC product[2][1], PilB product[2][1], FimC product[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): fimAICDFGH[2] |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
FimC has Ig-like domains: pfam PF00345 aligns to N-terminal residues 37-157, and pfam PF02753 aligns to C-terminal residues 161-237. First 36 aa are a type I signal peptide.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.