dapD:Quickview: Difference between revisions
Jump to navigation
Jump to search
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''dapD'' | ''dapD'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK0164, b0166, JW0161, ssa''<ref name='LIB:Riley_2006'/> | ''ECK0164, b0166, JW0161, ssa''<ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
tetrahydrodipicolinate succinylase subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | tetrahydrodipicolinate succinylase subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
| Line 43: | Line 43: | ||
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; mutations suppress growth defects of strains lacking superoxide dismutase<ref name='LIB:EcoGene'/> | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; mutations suppress growth defects of strains lacking superoxide dismutase<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase<ref name='LIB:Riley_2006'/>, B0166<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ssa<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DapD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase<ref name='LIB:Riley_2006'/>, B0166<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ssa<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DapD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
'''Cellular Component''' | |||
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:dapD|dapD]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:dapD|dapD]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=dapD&loc=MG1655:185947..185123,W3110:185947..185123,DH10B:160051..159227,REL606:188789..187965 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=188789&end=187965&gene=dapD&aa=mqqlqniietaferraeitpanadtvtreavnqvialldsgalrvaekidgqwvthqwlkkavllsfrindnqviegaesryfdkvpmkfadydearfqkegfrvvppaavrqgafiarntvlmpsyvnigayvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqanptiiedncfigarsevvegviveegsvismgvyigqstriydretgeihygrvpagsvvvsgnlpskdgkyslycavivkkvdaktrgkvginellrtid Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dapD+AND+escherichia+coli Pubmed(dapD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dapD Textpresso(dapD)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 00:04, 22 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
dapD |
|---|---|
| Gene Synonym(s) |
ECK0164, b0166, JW0161, ssa[1] |
| Product Desc. |
tetrahydrodipicolinate succinylase subunit[2][3]; Component of tetrahydrodipicolinate succinylase[3] 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; mutations suppress growth defects of strains lacking superoxide dismutase[4] |
| Product Synonyms(s) |
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase[1], B0166[2][1], Ssa[2][1], DapD[2][1] |
| Function from GO |
Cellular Component
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
A dapD mutant is not in the Keio collection; DAP auxotrophs require added DAP to grow and since no DAP was added during mutant construction, no auxotrophic mutants were recovered; dapD is not an essential gene (Baba, 2006). DapD contains hexapeptide repeats. Binds TrxA (Kumar, 2004). HT_Cmplx35_Cyt: DapD+SpeB.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.