cydB:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Update TableEdit tables.
update QV table
Line 27: Line 27:


|-
|-
!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
||
''cydB''  
''cydB''  
|-
|-
!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK0722, b0734, JW0723, cyd-2''<ref name='LIB:Riley_2006'/>
''ECK0722, b0734, JW0723, cyd-2''<ref name='LIB:Riley_2006'/>
|-
|-
!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
||
||
cytochrome <i>bd</i>-I terminal oxidase subunit II<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
cytochrome <i>bd</i>-I terminal oxidase subunit II<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
Line 43: Line 43:
Cytochrome d (bd-I) terminal oxidase subunit II; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by Fnr<ref name='LIB:EcoGene'/>
Cytochrome d (bd-I) terminal oxidase subunit II; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by Fnr<ref name='LIB:EcoGene'/>
|-
|-
!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
cytochrome d terminal oxidase, subunit II<ref name='LIB:Riley_2006'/>, B0734<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CydB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
cytochrome d terminal oxidase, subunit II<ref name='LIB:Riley_2006'/>, B0734<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CydB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
||
||
'''Molecular Function'''
* GO:0005506 iron ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009055 electron carrier activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0020037 heme binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0017004 cytochrome complex assembly ([http://www.geneontology.org/GO.evidence.shtml IDA])


|-
|-
!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
 
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:cydAB|cydAB]]<ref name='LIB:EcoCyc10.6'/>, OP00140  
transcription unit(s): [[:Category:Txn_unit:cydAB|cydAB]]<ref name='LIB:EcoCyc10.6'/>, OP00140  
|-
|-
!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
||


|-
!align=left {{table_heading_style}} |Quick Links
||
[http://ecoliwiki.net/tools/display_dna.php?gene=cydB&loc=MG1655:772265..773404,W3110:773464..774603,DH10B:824857..825996,REL606:753924..755063 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=753924&end=755063&gene=cydB&aa=midyevlrfiwwllvgvlligfavtdgfdmgvgmltrflgrndterriminsiaphwdgnqvwlitaggalfaawpmvyaaafsgfyvamilvlaslffrpvgfdyrskieetrwrnmwdwgifigsfvpplvigvafgnllqgvpfnvdeylrlyytgnffqllnpfgllagvvsvgmiitqgatylqmrtvgelhlrtrataqvaalvtlvcfalagvwvmygidgyvvkstmdhyaasnplnkevvreagawlvnfnntpilwaipalgvvlplltiltarmdkaawafvfssltlaciiltagiamfpfvmpsstmmnasltmwdatssqltlnvmtwvavvlvpiillytawcywkmfgritkediernthsly Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cydB+AND+escherichia+coli Pubmed(cydB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=cydB Textpresso(cydB)]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Revision as of 00:05, 22 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

cydB

Gene Synonym(s)

ECK0722, b0734, JW0723, cyd-2[1]

Product Desc.

cytochrome bd-I terminal oxidase subunit II[2][3];

Component of cytochrome bd-I terminal oxidase[2][3]

Cytochrome d (bd-I) terminal oxidase subunit II; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by Fnr[4]

Product Synonyms(s)

cytochrome d terminal oxidase, subunit II[1], B0734[2][1], CydB[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): cydAB[2], OP00140

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(cydB)    Textpresso(cydB)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Fnr and ArcA regulons. ArcA-P antagonizes H-NS repression of cydAB in response to limiting oxygen.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=cydB:Quickview&oldid=1032148"