cadC:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''cadC'' | ''cadC'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4127, b4133, JW4094''<ref name='LIB:Riley_2006'/> | ''ECK4127, b4133, JW4094''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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CadC transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | CadC transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Transcriptional activator for cadBA, low external pH-, low oxygen-, excess lysine-responsive; homodimeric<ref name='LIB:EcoGene'/> | Transcriptional activator for cadBA, low external pH-, low oxygen-, excess lysine-responsive; homodimeric<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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DNA-binding transcriptional activator product<ref name='LIB:Riley_2006'/>, B4133 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CadC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional activator of cad operon product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | DNA-binding transcriptional activator product<ref name='LIB:Riley_2006'/>, B4133 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CadC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional activator of cad operon product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
'''Molecular Function''' | |||
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:cadC|cadC]]<ref name='LIB:EcoCyc10.6'/>, OP00158 | transcription unit(s): [[:Category:Txn_unit:cadC|cadC]]<ref name='LIB:EcoCyc10.6'/>, OP00158 | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=cadC&loc=MG1655:4359957..4358419,W3110:4366612..4365074,REL606:4340655..4339117,DH10B:4460319..4458781 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4460319&end=4458781&gene=cadC&aa=mqqpvvrvgewlvtpsinqisrngrqltleprlidllvffaqhsgevlsrdelidnvwkrsivtnhvvtqsiselrkslkdndedspvyiatvpkrgyklmvpviwyseeegeeimlsspppipeavpatdspshslniqntatppeqspvkskrfttfwvwfffllslgicvalvafssldtrlpmsksrillnprdidinmvnkscnswsspyqlsyaigvgdlvatslntfstfmvhdkinynidepsssgktlsiafvnqrqyraqqcfmsiklvdnadgstmldkryvitngnqlaiqndlleslskalnqpwpqrmqetlqkilphrgalltnfyqahdyllhgddkslnrasellgeivqsspeftyaraekalvdivrhsqhpldekqlaalnteidnivtlpelnnlsiiyqikavsalvkgktdesyqaintgidlemswlnyvllgkvyemkgmnreaadayltafnlrpgantlywiengifqtsvpyvvpyldkflase Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cadC+AND+escherichia+coli Pubmed(cadC)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=cadC Textpresso(cadC)] | |||
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Revision as of 00:08, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
cadC |
|---|---|
| Gene Synonym(s) |
ECK4127, b4133, JW4094[1] |
| Product Desc. |
CadC transcriptional activator[2][3] Transcriptional activator for cadBA, low external pH-, low oxygen-, excess lysine-responsive; homodimeric[4] |
| Product Synonyms(s) |
DNA-binding transcriptional activator product[1], B4133 product[2][1], CadC product[2][1], transcriptional activator of cad operon product[2][1] |
| Function from GO |
Biological Process
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
cadC transcription is repressed by multicopy leuO. CadC is a membrane spanning protein with a TM helix predicted from 155 to 180. The C-terminal periplasmic domain senses external stimuli and the N-terminal domain activates transcription.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.