bhsA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''bhsA''  
''bhsA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ycfR, ECK1098, b1112, JW1098''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''ycfR, ECK1098, b1112, JW1098''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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conserved hypothetical protein<ref name='LIB:EcoCyc10.6'/>; protein involved in stress resistance and biofilm formation<ref name='LIB:EcoCyc11.1'/>
conserved hypothetical protein<ref name='LIB:EcoCyc10.6'/>; protein involved in stress resistance and biofilm formation<ref name='LIB:EcoCyc11.1'/>
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Biofilm, cell surface and signaling defects, YhcN family; molecular and physiological function unknown<ref name='LIB:EcoGene'/>
Biofilm, cell surface and signaling defects, YhcN family; molecular and physiological function unknown<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted protein<ref name='LIB:Riley_2006'/>, B1112<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcfR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BhsA<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
predicted protein<ref name='LIB:Riley_2006'/>, B1112<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcfR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BhsA<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0006950 response to stress ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0042710 biofilm formation ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ycfR|ycfR]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ycfR|ycfR]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=bhsA&loc=MG1655:1168296..1168553,W3110:1170650..1170907,REL606:1183667..1183924 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1183667&end=1183924&gene=bhsA&aa=mknvktliaaailssmsfasfaavevqstpegqqkvgtisanagtnlgsleeqlaqkademgaksfritsvtgpntlhgtaviyk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=bhsA+AND+escherichia+coli Pubmed(bhsA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=bhsA Textpresso(bhsA)]


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Revision as of 00:09, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

bhsA

Gene Synonym(s)

ycfR, ECK1098, b1112, JW1098[1][2]

Product Desc.

conserved hypothetical protein[3]; protein involved in stress resistance and biofilm formation[2]

Biofilm, cell surface and signaling defects, YhcN family; molecular and physiological function unknown[4]

Product Synonyms(s)

predicted protein[1], B1112[3][1], YcfR[3][1], BhsA[2][1]

Function from GO

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycfR[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(bhsA)    Textpresso(bhsA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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Complex mutant phenotype includes sensitivity to acid, heat, hydrogen peroxide, and cadmium, as well as 5-fold increased biofilm in the presence of glucose, increased cell surface hydrophobicity, and increased aggregation; the mutant phenotype of enhanced biofilm formation upon stress is suppressed by exogenous indole or by a tnaA mutation (Zhang, 2007). Induced during biofilm formation. Crp regulon. Probable periplasmic protein. The first 22 aa are predicted to be a type I signal peptide.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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