arnC:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''arnC''  
''arnC''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''yfbF, ECK2247, b2254, JW2248, pmrF, ORF2''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yfbF, ECK2247, b2254, JW2248, pmrF, ORF2''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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undecaprenyl phosphate-L-Ara4FN transferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
undecaprenyl phosphate-L-Ara4FN transferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Undecaprenyl phosphate-alpha-L-ara4FN synthase<ref name='LIB:EcoGene'/>
Undecaprenyl phosphate-alpha-L-ara4FN synthase<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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undecaprenyl phosphate-L-Ara4FN transferase<ref name='LIB:Riley_2006'/>, YfbF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PmrF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2254<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ArnC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
undecaprenyl phosphate-L-Ara4FN transferase<ref name='LIB:Riley_2006'/>, YfbF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PmrF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2254<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ArnC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0016780 phosphotransferase activity, for other substituted phosphate groups ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0016020 membrane ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yfbE|yfbE]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yfbE|yfbE]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=arnC&loc=MG1655:2365093..2366061,W3110:2371741..2372709,DH10B:2456081..2457049,REL606:2313584..2314552 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2313584&end=2314552&gene=arnC&aa=mfeihpvkkvsvvipvyneqeslpelirrtttaceslgkeyeilliddgssdnsahmlveasqaenshivsillnrnygqhsaimagfshvtgdliitldadlqnppeeiprlvakadegydvvgtvrqnrqdswfrktaskminrliqrttgkamgdygcmlrayrrhivdamlhcherstfipilanifarraieipvhhaerefgeskysfmrlinlmydlvtcltttplrmlsllgsiiaiggfsiavllvilrltfgpqwaaegvfmlfavlftfigaqfigmgllgeyigriytdvrarpryfvqqvirpsskene Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=arnC+AND+escherichia+coli Pubmed(arnC)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=arnC Textpresso(arnC)]


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Revision as of 00:11, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

arnC

Gene Synonym(s)

yfbF, ECK2247, b2254, JW2248, pmrF, ORF2[1][2]

Product Desc.

undecaprenyl phosphate-L-Ara4FN transferase[2][3]

Undecaprenyl phosphate-alpha-L-ara4FN synthase[4]

Product Synonyms(s)

undecaprenyl phosphate-L-Ara4FN transferase[1], YfbF[2][1], PmrF[2][1], B2254[2][1], ArnC[2][1]

Function from GO

Molecular Function

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yfbE[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(arnC)    Textpresso(arnC)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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Involved in the modification of lipid A phosphates with aminoarabinose that is required for polymyxin B and cationic antimicrobial peptide resistance. UDP-beta-4-deoxy-4-formamido-L-arabinose is the sugar donor. basRS regulon.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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