patA:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
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''patA''  
''patA''  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left |Gene Synonym(s)
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''ECK3063, b3073, JW5510, oat, pat, patA''<ref name='LIB:Riley_2006'/>, ygjG product
''ECK3063, b3073, JW5510, oat, pat, patA''<ref name='LIB:Riley_2006'/>, ygjG product
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!align=left {{table_heading_style}} |Product Desc.
!align=left |Product Desc.
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G7596<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
G7596<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Putrescine:2-oxoglutaric acid aminotransferase; sigma 54-dependent<ref name='LIB:EcoGene'/>
Putrescine:2-oxoglutaric acid aminotransferase; sigma 54-dependent<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left |Product Synonyms(s)
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putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B3073<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Oat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B3073<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgjG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Oat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pat<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:patA|patA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:patA|patA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left |Regulation/Activity
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Revision as of 02:20, 10 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

patA

Gene Synonym(s)

ECK3063, b3073, JW5510, oat, pat, patA[1], ygjG product

Product Desc.

G7596[2][3]

Putrescine:2-oxoglutaric acid aminotransferase; sigma 54-dependent[4]

Product Synonyms(s)

putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent[1], B3073[2][1], YgjG[2][1], Oat[2][1], Pat[2][1]

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): patA[2]

Regulation/Activity


edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


AFMB Structural Genomics target No. 29 (http://afmb.cnrs-mrs.fr/article171.html). The pat gene, mapped to 89.1 minutes, was thought to encode this activity. No ORF in the metB-argH region is a candidate. perhaps the pat mutation is a ygjG regulatory mutation and ygjG is the pat structural gene. YgjG also transaminates cadaverine and spermidine.YdcW couples with YgjG to convert putrescine to gamma-aminobutyric acid.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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