clcA:Evolution: Difference between revisions

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Revision as of 00:22, 9 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000018612 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000018663 (score: 0.067)
  • ENSANGP00000019052 (score: 0.061)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000022004 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000004269 (score: 0.097)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G26240 (score: 1.000; bootstrap: 71%)
  • AT5G49890 (score: 0.334)
  • AT5G33280 (score: 0.325)
  • AT5G40890 (score: 0.312)
  • AT3G27170 (score: 0.312)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000001973 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000014770 (score: 0.797)
  • ENSBTAP00000039858 (score: 0.772)
  • ENSBTAP00000016291 (score: 0.116)
  • ENSBTAP00000021122 (score: 0.110)
  • ENSBTAP00000027587 (score: 0.099)
  • ENSBTAP00000012099 (score: 0.098)
  • ENSBTAP00000014531 (score: 0.062)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041732 (score: 1.000; bootstrap: 100%)
  • WBGene00026154 (score: 0.095)
  • WBGene00033929 (score: 0.070)
  • WBGene00026047 (score: 0.062)
  • WBGene00034871 (score: 0.059)
  • WBGene00025876 (score: 0.055)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000530 (score: 1.000; bootstrap: 100%)
  • WBGene00000531 (score: 0.283)
  • WBGene00000529 (score: 0.236)
  • WBGene00000528 (score: 0.228)
  • WBGene00000532 (score: 0.070)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024331 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000028947 (score: 0.252)
  • ENSCAFP00000011380 (score: 0.088)
  • ENSCAFP00000023526 (score: 0.085)
  • ENSCAFP00000016986 (score: 0.082)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014414 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000008574 (score: 0.062)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1379 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2313 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0217756 (score: 1.000; bootstrap: 100%)
  • DDB0215359 (score: 0.403)
  • DDB0215063 (score: 0.403)
  • DDB0169026 (score: 0.364)
  • DDB0218077 (score: 0.159)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036566 (score: 1.000; bootstrap: 100%)
  • FBgn0051116 (score: 0.072)
  • FBgn0033755 (score: 0.062)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18785-PA (score: 1.000; bootstrap: 100%)
  • GA21190-PA (score: 0.087)
  • GA16020-PA (score: 0.069)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000026752 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000031721 (score: 0.791)
  • ENSGALP00000015730 (score: 0.779)
  • ENSGALP00000009650 (score: 0.291)
  • ENSGALP00000007290 (score: 0.091)
  • ENSGALP00000023640 (score: 0.089)
  • ENSGALP00000012212 (score: 0.078)
  • ENSGALP00000024538 (score: 0.055)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000343213 (score: 1.000; bootstrap: 100%)
  • ENSP00000262649 (score: 0.798)
  • ENSP00000353857 (score: 0.788)
  • ENSP00000265593 (score: 0.112)
  • ENSP00000262318 (score: 0.110)
  • ENSP00000234487 (score: 0.106)
  • ENSP00000339867 (score: 0.098)
  • ENSP00000332771 (score: 0.060)
  • ENSP00000349974 (score: 0.059)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000030357 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000017923 (score: 0.585)
  • ENSMMUP00000013392 (score: 0.420)
  • ENSMMUP00000009864 (score: 0.114)
  • ENSMMUP00000010286 (score: 0.109)
  • ENSMMUP00000023981 (score: 0.060)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004121 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000014144 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000021752 (score: 0.792)
  • ENSMODP00000003669 (score: 0.751)
  • ENSMODP00000003112 (score: 0.356)
  • ENSMODP00000001665 (score: 0.329)
  • ENSMODP00000020222 (score: 0.096)
  • ENSMODP00000013721 (score: 0.088)

From Inparanoid:20070104

Mus musculus

  • MGI:99486 (score: 1.000; bootstrap: 100%)
  • MGI:104571 (score: 0.784)
  • MGI:103555 (score: 0.784)
  • MGI:105061 (score: 0.113)
  • MGI:1347048 (score: 0.112)
  • MGI:1347049 (score: 0.110)
  • MGI:88417 (score: 0.096)
  • MGI:1329026 (score: 0.060)
  • MGI:1930643 (score: 0.053)

From Inparanoid:20070104

Oryza gramene

  • Q6YVX5 (score: 1.000; bootstrap: 54%)
  • Q8LPA1 (score: 0.924)
  • Q8LPA0 (score: 0.883)
  • Q8LPA2 (score: 0.859)
  • Q84QC8 (score: 0.794)
  • Q5N8W8 (score: 0.673)
  • Q7XTM5 (score: 0.555)
  • Q6ZDC2 (score: 0.547)
  • Q851D8 (score: 0.357)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000041062 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000028470 (score: 0.797)
  • ENSPTRP00000037098 (score: 0.185)
  • ENSPTRP00000026999 (score: 0.125)
  • ENSPTRP00000012980 (score: 0.110)
  • ENSPTRP00000000295 (score: 0.093)
  • ENSPTRP00000000391 (score: 0.065)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000003895 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000004778 (score: 0.719)
  • ENSRNOP00000014845 (score: 0.719)
  • ENSRNOP00000048776 (score: 0.103)
  • ENSRNOP00000023615 (score: 0.100)
  • ENSRNOP00000011287 (score: 0.094)
  • ENSRNOP00000013103 (score: 0.052)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC19C71 (score: 1.000; bootstrap: 100%)
  • SPBC8872 (score: 0.080)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000163159 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000169437 (score: 0.178)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00008386001 (score: 1.000; bootstrap: 68%)
  • GSTENP00026719001 (score: 0.650)
  • GSTENP00015349001 (score: 0.395)
  • GSTENP00020608001 (score: 0.117)
  • GSTENP00010593001 (score: 0.086)
  • GSTENP00005643001 (score: 0.065)
  • GSTENP00019420001 (score: 0.061)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000004481 (score: 1.000; bootstrap: 81%)
  • ENSXETP00000034303 (score: 0.544)
  • ENSXETP00000050058 (score: 0.531)

From Inparanoid:20070104

Shigella flexneri

YADQ

From SHIGELLACYC

E. coli O157

YADQ

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00654


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Notes

Links

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References

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Categories

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