AlignACE: Difference between revisions
Amandasupak (talk | contribs) Table edited by Amandasupak via TableEdit |
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!align=left {{table heading style}} |What: | !align=left {{table heading style}} |What: | ||
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Matrices which search for additional binding sites in the E. coli genomic sequence. | |||
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!align=left {{table heading style}} |Who: | !align=left {{table heading style}} |Who: | ||
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Abigail Manson McGuire | Abigail Manson McGuire | ||
Genetics Dept. | Genetics Dept. | ||
Harvard Medical School | Harvard Medical School | ||
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Revision as of 21:14, 3 June 2009
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| What: |
Matrices which search for additional binding sites in the E. coli genomic sequence. |
| Who: |
Abigail Manson McGuire Genetics Dept. Harvard Medical School |
| Updates: | |
| Upcoming events: | |
| Web Services: |
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| edit table |
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About AlignACE
The AlignACE website has a collection of predicted transcription factor binding sites based on running scanACE, an algorithm published[1] by the Church lab against the MG1655 genome.
Content
AlignACE has a table with links from the 59 DNA-binding proteins for which they have predicted binding sites by extrapolation from footprinting data. There are also summary tables and the code for scanACE and alignACE can be downloaded via a link to a Church lab website. These programs implement the approach of Berg and von Hippel [2][3]
Using AlignACE
Browsing
Searching
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
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- ↑ Robison, K et al. (1998) A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. J. Mol. Biol. 284 241-54 PubMed
- ↑ Berg, OG & von Hippel, PH (1988) Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites. J Mol Biol 200 709-23 PubMed
- ↑ Berg, OG & von Hippel, PH (1987) Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J. Mol. Biol. 193 723-50 PubMed