yhbJ:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
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''yhbJ''  
''yhbJ''  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left |Gene Synonym(s)
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''ECK3194, b3205, JW3172''<ref name='LIB:Riley_2006'/>
''ECK3194, b3205, JW3172''<ref name='LIB:Riley_2006'/>
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!align=left {{table_heading_style}} |Product Desc.
!align=left |Product Desc.
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predicted P-loop containing ATPase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted P-loop containing ATPase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Senses glucosamine-6-phosphate and inactivates glmZ sRNA; NTPase<ref name='LIB:EcoGene'/>
Senses glucosamine-6-phosphate and inactivates glmZ sRNA; NTPase<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left |Product Synonyms(s)
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predicted protein with nucleoside triphosphate hydrolase domain<ref name='LIB:Riley_2006'/>, B3205<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted protein with nucleoside triphosphate hydrolase domain<ref name='LIB:Riley_2006'/>, B3205<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:rpoN-yhbH-ptsN-yhbJ-npr|rpoN-yhbH-ptsN-yhbJ-npr]]<ref name='LIB:EcoCyc10.6'/>, rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO  
transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:rpoN-yhbH-ptsN-yhbJ-npr|rpoN-yhbH-ptsN-yhbJ-npr]]<ref name='LIB:EcoCyc10.6'/>, rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO  
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left |Regulation/Activity
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Revision as of 02:22, 10 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

yhbJ

Gene Synonym(s)

ECK3194, b3205, JW3172[1]

Product Desc.

predicted P-loop containing ATPase[2][3]

Senses glucosamine-6-phosphate and inactivates glmZ sRNA; NTPase[4]

Product Synonyms(s)

predicted protein with nucleoside triphosphate hydrolase domain[1], B3205[2][1], YhbJ[2][1]

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): lptB-rpoN-yhbH-ptsN-yhbJ[2], yhbG-rpoN-yhbH-ptsN-yhbJ, rpoN-yhbH-ptsN-yhbJ-npr[2], rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO

Regulation/Activity


edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Unprocessed glmZ upregulates glmS mRNA, so yhbJ mediates the negative feedback regulation of glmS, through glmZ, by the GlmS product glucosamine-6-phosphate. AFMB Structural Genomics target No. 26 (http://afmb.cnrs-mrs.fr/article171.html). The rpoN operon contains rpoN-hpf-ptsN-yhbJ-npr. UPF0042 family. YhbJ binds ATP and GTP and is an NTPase (Luciano, 2009).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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