ydaM:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
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''ydaM''  
''ydaM''  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left |Gene Synonym(s)
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''ECK1338, b1341, JW5206''<ref name='LIB:Riley_2006'/>
''ECK1338, b1341, JW5206''<ref name='LIB:Riley_2006'/>
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!align=left {{table_heading_style}} |Product Desc.
!align=left |Product Desc.
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diguanylate cyclase<ref name='LIB:EcoCyc10.6'/>; diguanylate cyclase, transcriptional modulator<ref name='LIB:EcoCyc11.1'/>
diguanylate cyclase<ref name='LIB:EcoCyc10.6'/>; diguanylate cyclase, transcriptional modulator<ref name='LIB:EcoCyc11.1'/>
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Diguanylate cyclase, csgD regulator; also regulates GGDEF protein YaiC<ref name='LIB:EcoGene'/>
Diguanylate cyclase, csgD regulator; also regulates GGDEF protein YaiC<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left |Product Synonyms(s)
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predicted diguanylate cyclase, GGDEF domain signalling protein<ref name='LIB:Riley_2006'/>, B1341<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdaM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted diguanylate cyclase, GGDEF domain signalling protein<ref name='LIB:Riley_2006'/>, B1341<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdaM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ydaM|ydaM]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ydaM|ydaM]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left |Regulation/Activity
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Revision as of 01:42, 10 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

ydaM

Gene Synonym(s)

ECK1338, b1341, JW5206[1]

Product Desc.

diguanylate cyclase[2]; diguanylate cyclase, transcriptional modulator[3]

Diguanylate cyclase, csgD regulator; also regulates GGDEF protein YaiC[4]

Product Synonyms(s)

predicted diguanylate cyclase, GGDEF domain signalling protein[1], B1341[2][1], YdaM[2][1]

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydaM[2]

Regulation/Activity


edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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YdaM has a central PAS domain, then a C-terminal diguanylate cyclase GGDEF domain. RpoS regulon (Weber, 2006). YdaM expression is thermoregulated and may act as a thermosensor for curli control (Weber, 2006). YdaM/Gmr(YciR) constitute an RpoS-regulated c-di-GMP synthesis/degradation module inversely regulated by Hns and controlling the expression of curli genes (Weber, 2006). YdaM has diguanylate cyclase activity in vitro (Weber, 2006).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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