rsmF:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
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''rsmF''  
''rsmF''  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left |Gene Synonym(s)
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''yebU, ECK1834, b1835, JW5301''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yebU, ECK1834, b1835, JW5301''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left {{table_heading_style}} |Product Desc.
!align=left |Product Desc.
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16S rRNA m<sup>5</sup>C1407 specific methyltransferase<ref name='PMID:16678201'/><ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>. Inactivation of the yebU gene leads to loss of methylation at C1407 in 16
16S rRNA m<sup>5</sup>C1407 specific methyltransferase<ref name='PMID:16678201'/><ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>. Inactivation of the yebU gene leads to loss of methylation at C1407 in 16
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16S rRNA m(5)C1407 methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/>
16S rRNA m(5)C1407 methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left |Product Synonyms(s)
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predicted methyltransferase<ref name='LIB:Riley_2006'/>, B1835<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted methyltransferase<ref name='LIB:Riley_2006'/>, B1835<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yebU|yebU]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yebU|yebU]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left |Regulation/Activity
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Revision as of 05:50, 9 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rsmF

Gene Synonym(s)

yebU, ECK1834, b1835, JW5301[1][2]

Product Desc.

16S rRNA m5C1407 specific methyltransferase[3][2][4]. Inactivation of the yebU gene leads to loss of methylation at C1407 in 16 S rRNA, but does not interfere with methylation at C1962 in 23 S rRNA. Purified recombinant YebU protein retains its specificity for C1407 in vitro, and methylates 30 S subunits (but not naked 16 S rRNA or 70 S ribosomes) isolated from yebU knockout strains.[3]. Andersen and Douthwaite suggest that a more appropriate designation for yebU would be the rRNA small subunit methyltransferase gene rsmF.

16S rRNA m(5)C1407 methyltransferase, SAM-dependent[5]

Product Synonyms(s)

predicted methyltransferase[1], B1835[2][1], YebU[2][1], RsmF[2][1]

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yebU[2]

Regulation/Activity


edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Andersen, NM & Douthwaite, S (2006) YebU is a m5C methyltransferase specific for 16 S rRNA nucleotide 1407. J. Mol. Biol. 359 777-86 PubMed
  4. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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