yjcE:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
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''Oryza gramene''   
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00999 PFAM:PF00999]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00999 PFAM:PF00999]
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
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{{RefHelp}}
 
<references/>
<references/>
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Revision as of 22:00, 21 January 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000005188 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000004030 (score: 0.082)
  • ENSANGP00000005144 (score: 0.056)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000012084 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G01980 (score: 1.000; bootstrap: 69%)
  • AT1G14660 (score: 0.389)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000033117 (score: 1.000; bootstrap: 78%)
  • ENSBTAP00000037705 (score: 0.317)
  • ENSBTAP00000006073 (score: 0.247)
  • ENSBTAP00000028736 (score: 0.241)
  • ENSBTAP00000002235 (score: 0.143)
  • ENSBTAP00000011809 (score: 0.089)
  • ENSBTAP00000036828 (score: 0.085)
  • ENSBTAP00000031477 (score: 0.068)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036357 (score: 1.000; bootstrap: 100%)
  • WBGene00024155 (score: 0.311)
  • WBGene00028502 (score: 0.311)
  • WBGene00033870 (score: 0.273)
  • WBGene00037143 (score: 0.187)
  • WBGene00032172 (score: 0.169)
  • WBGene00029852 (score: 0.120)
  • WBGene00024153 (score: 0.113)
  • WBGene00027158 (score: 0.103)
  • WBGene00024151 (score: 0.058)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003729 (score: 1.000; bootstrap: 100%)
  • WBGene00003731 (score: 0.307)
  • WBGene00003736 (score: 0.305)
  • WBGene00003734 (score: 0.268)
  • WBGene00003730 (score: 0.263)
  • WBGene00003943 (score: 0.190)
  • WBGene00003732 (score: 0.169)
  • WBGene00003733 (score: 0.115)
  • WBGene00003735 (score: 0.112)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003119 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000017978 (score: 0.303)
  • ENSCAFP00000030208 (score: 0.227)
  • ENSCAFP00000016048 (score: 0.201)
  • ENSCAFP00000016847 (score: 0.083)
  • ENSCAFP00000011862 (score: 0.053)
  • ENSCAFP00000027920 (score: 0.053)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019439 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000008318 (score: 0.179)
  • ENSCINP00000018345 (score: 0.146)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041212-7 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041212-9 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050612-270 (score: 0.169)
  • ZDB-GENE-050913-8 (score: 0.169)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231789 (score: 1.000; bootstrap: 100%)
  • DDB0204263 (score: 0.213)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0040297 (score: 1.000; bootstrap: 100%)
  • FBgn0026787 (score: 0.057)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21648-PA (score: 1.000; bootstrap: 100%)
  • GA11457-PA (score: 0.057)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027059 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000027058 (score: 0.525)
  • ENSGALP00000001353 (score: 0.370)
  • ENSGALP00000020419 (score: 0.300)
  • ENSGALP00000012759 (score: 0.271)
  • ENSGALP00000011518 (score: 0.117)
  • ENSGALP00000013041 (score: 0.066)
  • ENSGALP00000003733 (score: 0.056)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000233969 (score: 1.000; bootstrap: 74%)
  • ENSP00000263980 (score: 0.369)
  • ENSP00000264938 (score: 0.287)
  • ENSP00000299798 (score: 0.276)
  • ENSP00000351216 (score: 0.075)
  • ENSP00000354847 (score: 0.061)
  • ENSP00000320246 (score: 0.056)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000005571 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000022205 (score: 0.299)
  • ENSMMUP00000023802 (score: 0.250)
  • ENSMMUP00000005050 (score: 0.122)
  • ENSMMUP00000012681 (score: 0.056)
  • ENSMMUP00000003653 (score: 0.050)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000002960 (score: 1.000; bootstrap: 89%)
  • ENSMODP00000002941 (score: 0.494)
  • ENSMODP00000018043 (score: 0.378)
  • ENSMODP00000000812 (score: 0.277)
  • ENSMODP00000007451 (score: 0.277)
  • ENSMODP00000020380 (score: 0.070)
  • ENSMODP00000026552 (score: 0.063)
  • ENSMODP00000000565 (score: 0.050)

From Inparanoid:20070104

Mus musculus

  • MGI:105075 (score: 1.000; bootstrap: 70%)
  • MGI:105074 (score: 0.474)
  • MGI:102462 (score: 0.371)
  • MGI:1924281 (score: 0.076)
  • MGI:2679732 (score: 0.063)
  • MGI:2443511 (score: 0.056)

From Inparanoid:20070104

Oryza gramene

  • Q5QIU6 (score: 1.000; bootstrap: 60%)
  • Q84XT0 (score: 0.973)
  • Q58I37 (score: 0.927)
  • Q9SXJ8 (score: 0.712)
  • Q564K0 (score: 0.707)
  • Q6VVA7 (score: 0.702)
  • Q852S3 (score: 0.702)
  • Q6UZE7 (score: 0.699)
  • Q94BM3 (score: 0.698)
  • Q5QIU7 (score: 0.692)
  • Q7XYX0 (score: 0.691)
  • Q67BJ5 (score: 0.690)
  • Q84MI0 (score: 0.685)
  • Q7XYX2 (score: 0.678)
  • Q84MH9 (score: 0.664)
  • Q7XYX3 (score: 0.658)
  • Q94BM4 (score: 0.658)
  • Q6UUW2 (score: 0.655)
  • Q5I6M7 (score: 0.655)
  • Q71G55 (score: 0.655)
  • Q84RD4 (score: 0.650)
  • Q7Y071 (score: 0.648)
  • Q7XYX1 (score: 0.627)
  • Q5ZA11 (score: 0.456)
  • Q850J9 (score: 0.249)
  • Q6EN69 (score: 0.117)
  • Q9ATZ9 (score: 0.093)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000021080 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000014041 (score: 0.258)
  • ENSPTRP00000000698 (score: 0.090)
  • ENSPTRP00000028613 (score: 0.082)
  • ENSPTRP00000040894 (score: 0.075)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000021270 (score: 1.000; bootstrap: 84%)
  • ENSRNOP00000020716 (score: 0.487)
  • ENSRNOP00000011049 (score: 0.369)
  • ENSRNOP00000020711 (score: 0.282)
  • ENSRNOP00000047397 (score: 0.277)
  • ENSRNOP00000012175 (score: 0.074)
  • ENSRNOP00000001171 (score: 0.054)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR456W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000127921 (score: 1.000; bootstrap: 69%)
  • NEWSINFRUP00000146473 (score: 0.574)
  • NEWSINFRUP00000133081 (score: 0.341)
  • NEWSINFRUP00000163811 (score: 0.311)
  • NEWSINFRUP00000153535 (score: 0.277)
  • NEWSINFRUP00000153036 (score: 0.227)
  • NEWSINFRUP00000133370 (score: 0.099)
  • NEWSINFRUP00000170031 (score: 0.071)
  • NEWSINFRUP00000168016 (score: 0.059)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022739001 (score: 1.000; bootstrap: 100%)
  • GSTENP00010467001 (score: 0.333)
  • GSTENP00025944001 (score: 0.288)
  • GSTENP00019354001 (score: 0.248)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000031746 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000010864 (score: 0.518)
  • ENSXETP00000044689 (score: 0.499)
  • ENSXETP00000017713 (score: 0.373)
  • ENSXETP00000050077 (score: 0.295)
  • ENSXETP00000010856 (score: 0.130)
  • ENSXETP00000003420 (score: 0.090)
  • ENSXETP00000051781 (score: 0.081)
  • ENSXETP00000042777 (score: 0.079)
  • ENSXETP00000008937 (score: 0.065)

From Inparanoid:20070104

Shigella flexneri

YJCE

From SHIGELLACYC

E. coli O157

YJCE

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00999


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Notes

Links

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Name URL Comments
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References

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