rffH:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Edited by wikibot
imported>Wikientrybot
Move help links into the <above> tag inside templates.
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='213414'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Apis mellifera''   
''Apis mellifera''   
Line 39: Line 39:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
Line 50: Line 50:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
Line 58: Line 58:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
Line 66: Line 66:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Ciona intestinalis''   
''Ciona intestinalis''   
Line 75: Line 75:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Danio rerio''   
''Danio rerio''   
Line 87: Line 87:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
Line 95: Line 95:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila melanogaster''   
''Drosophila melanogaster''   
Line 103: Line 103:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
Line 111: Line 111:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Homo sapiens''   
''Homo sapiens''   
Line 119: Line 119:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 127: Line 127:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Pan troglodytes''   
''Pan troglodytes''   
Line 135: Line 135:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
Line 142: Line 142:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
Line 150: Line 150:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 158: Line 158:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 165: Line 165:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 172: Line 172:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51547.W46ac0c4c82f95&page=51547&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51547.W46ac0c4c82f95&page=51547&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.51547.W46ac0c4c82f95-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.51547.W46ac0c4c82f95-->
{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
Line 193: Line 194:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='213415'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00483 PFAM:PF00483]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00483 PFAM:PF00483]
|
|
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51547.Z46ac0c645fcf2&page=51547&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51547.Z46ac0c645fcf2&page=51547&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.51547.Z46ac0c645fcf2-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.51547.Z46ac0c645fcf2-->
{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
Line 221: Line 223:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='115564'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
 
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51547.K46a8491b160b4&page=51547&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51547.K46a8491b160b4&page=51547&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.51547.K46a8491b160b4-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.51547.K46a8491b160b4-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
<noinclude>
<noinclude>

Revision as of 21:59, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000017553 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G55590 (score: 1.000; bootstrap: 100%)
  • AT2G39770 (score: 1.000; bootstrap: 100%)
  • AT4G30570 (score: 0.662)
  • AT2G04650 (score: 0.194)
  • AT1G74910 (score: 0.194)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028569 (score: 1.000; bootstrap: 100%)
  • WBGene00033175 (score: 0.102)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00016583 (score: 1.000; bootstrap: 100%)
  • WBGene00021628 (score: 0.103)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000001091 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000010012 (score: 0.100)
  • ENSCINP00000013655 (score: 0.055)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040801-234 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040801-248 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040704-37 (score: 0.193)
  • ZDB-GENE-040704-37 (score: 0.193)
  • ZDB-CDNA-040425-2484 (score: 0.192)
  • ZDB-GENE-040426-1550 (score: 0.192)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231665 (score: 1.000; bootstrap: 100%)
  • DDB0231666 (score: 0.238)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037279 (score: 1.000; bootstrap: 100%)
  • FBgn0034035 (score: 0.102)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10892-PA (score: 1.000; bootstrap: 100%)
  • GA20898-PA (score: 0.117)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000309092 (score: 1.000; bootstrap: 100%)
  • ENSP00000315925 (score: 0.182)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000016151 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018851 (score: 0.191)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000025774 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000022137 (score: 0.147)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDL055C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC19061 (score: 1.000; bootstrap: 100%)
  • SPBC13G12 (score: 0.134)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000175904 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000134228 (score: 0.187)

From Inparanoid:20070104

Shigella flexneri

RFFH

From SHIGELLACYC

E. coli O157

RFFH

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00483


edit table


Notes

Links

[back to top]


Name URL Comments
edit table


References

[back to top]




Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rffH:Evolution&oldid=653861"