frlA:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
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===Notes===
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==References==
==References==
{{BacktoTop}}
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Revision as of 21:57, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020223 (score: 1.000; bootstrap: 97%)
  • ENSANGP00000021741 (score: 0.334)
  • ENSANGP00000026615 (score: 0.290)
  • ENSANGP00000011375 (score: 0.268)
  • ENSANGP00000000769 (score: 0.249)
  • ENSANGP00000016165 (score: 0.151)
  • ENSANGP00000013763 (score: 0.145)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000015476 (score: 1.000; bootstrap: 64%)
  • ENSAPMP00000016450 (score: 0.326)
  • ENSAPMP00000005622 (score: 0.293)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G03720 (score: 1.000; bootstrap: 80%)
  • AT1G58030 (score: 0.595)
  • AT5G36940 (score: 0.578)
  • AT1G05940 (score: 0.178)
  • AT5G04770 (score: 0.174)
  • AT3G10600 (score: 0.169)
  • AT4G21120 (score: 0.122)
  • AT2G34960 (score: 0.100)
  • AT1G17120 (score: 0.099)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008848 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000009750 (score: 0.468)
  • ENSBTAP00000016074 (score: 0.411)
  • ENSBTAP00000009302 (score: 0.393)
  • ENSBTAP00000034433 (score: 0.273)
  • ENSBTAP00000021642 (score: 0.224)
  • ENSBTAP00000019737 (score: 0.201)
  • ENSBTAP00000037000 (score: 0.132)
  • ENSBTAP00000007569 (score: 0.130)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00042289 (score: 1.000; bootstrap: 96%)
  • WBGene00038493 (score: 0.765)
  • WBGene00039142 (score: 0.331)
  • WBGene00025215 (score: 0.288)
  • WBGene00026891 (score: 0.114)
  • WBGene00032025 (score: 0.104)
  • WBGene00029323 (score: 0.091)
  • WBGene00041961 (score: 0.061)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000010 (score: 1.000; bootstrap: 100%)
  • WBGene00000005 (score: 0.646)
  • WBGene00000006 (score: 0.365)
  • WBGene00000007 (score: 0.259)
  • WBGene00000008 (score: 0.256)
  • WBGene00000009 (score: 0.184)
  • WBGene00000002 (score: 0.120)
  • WBGene00000004 (score: 0.108)
  • WBGene00000003 (score: 0.102)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005591 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000029477 (score: 0.401)
  • ENSCAFP00000030133 (score: 0.381)
  • ENSCAFP00000016456 (score: 0.366)
  • ENSCAFP00000016843 (score: 0.354)
  • ENSCAFP00000011039 (score: 0.340)
  • ENSCAFP00000011140 (score: 0.334)
  • ENSCAFP00000005734 (score: 0.223)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016234 (score: 1.000; bootstrap: 97%)
  • ENSCINP00000016223 (score: 0.635)
  • ENSCINP00000012259 (score: 0.286)
  • ENSCINP00000008645 (score: 0.278)
  • ENSCINP00000010558 (score: 0.255)
  • ENSCINP00000016047 (score: 0.235)
  • ENSCINP00000006752 (score: 0.231)
  • ENSCINP00000017734 (score: 0.230)
  • ENSCINP00000017702 (score: 0.211)
  • ENSCINP00000003086 (score: 0.203)
  • ENSCINP00000011430 (score: 0.202)
  • ENSCINP00000019035 (score: 0.192)
  • ENSCINP00000004385 (score: 0.173)
  • ENSCINP00000003301 (score: 0.162)
  • ENSCINP00000005678 (score: 0.160)
  • ENSCINP00000017628 (score: 0.117)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-000607-21 (score: 1.000; bootstrap: 88%)
  • ZDB-CDNA-051127-4 (score: 0.783)
  • ZDB-GENE-051127-5 (score: 0.783)
  • ZDB-GENE-030616-586 (score: 0.443)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185190 (score: 1.000; bootstrap: 89%)
  • DDB0189300 (score: 1.000; bootstrap: 82%)
  • DDB0205912 (score: 0.262)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030574 (score: 1.000; bootstrap: 100%)
  • FBgn0002778 (score: 0.269)
  • FBgn0028425 (score: 0.267)
  • FBgn0039844 (score: 0.255)
  • FBgn0039487 (score: 0.220)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21769-PA (score: 1.000; bootstrap: 100%)
  • GA11552-PA (score: 0.264)
  • GA19336-PA (score: 0.227)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007521 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000026542 (score: 0.448)
  • ENSGALP00000030215 (score: 0.328)
  • ENSGALP00000001257 (score: 0.316)
  • ENSGALP00000015861 (score: 0.311)
  • ENSGALP00000009379 (score: 0.305)
  • ENSGALP00000030208 (score: 0.299)
  • ENSGALP00000007520 (score: 0.260)
  • ENSGALP00000020919 (score: 0.258)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000261622 (score: 1.000; bootstrap: 100%)
  • ENSP00000320378 (score: 0.469)
  • ENSP00000219343 (score: 0.408)
  • ENSP00000285850 (score: 0.398)
  • ENSP00000280612 (score: 0.389)
  • ENSP00000253188 (score: 0.382)
  • ENSP00000023064 (score: 0.330)
  • ENSP00000350596 (score: 0.240)
  • ENSP00000333901 (score: 0.232)
  • ENSP00000297524 (score: 0.111)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029357 (score: 1.000; bootstrap: 57%)
  • ENSMMUP00000011357 (score: 0.505)
  • ENSMMUP00000004365 (score: 0.427)
  • ENSMMUP00000014640 (score: 0.251)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000015349 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000012217 (score: 0.343)
  • ENSMODP00000006253 (score: 0.322)
  • ENSMODP00000006572 (score: 0.321)
  • ENSMODP00000005429 (score: 0.319)
  • ENSMODP00000000054 (score: 0.316)
  • ENSMODP00000015275 (score: 0.283)
  • ENSMODP00000009569 (score: 0.278)
  • ENSMODP00000007458 (score: 0.188)
  • ENSMODP00000005647 (score: 0.149)

From Inparanoid:20070104

Mus musculus

  • MGI:1353656 (score: 1.000; bootstrap: 100%)
  • MGI:3045351 (score: 0.363)
  • MGI:1337120 (score: 0.347)
  • MGI:1347355 (score: 0.344)
  • MGI:1298205 (score: 0.344)
  • MGI:2142598 (score: 0.339)
  • MGI:1355323 (score: 0.325)
  • MGI:1858261 (score: 0.308)
  • MGI:1921337 (score: 0.180)
  • MGI:3648364 (score: 0.121)
  • MGI:2156159 (score: 0.101)

From Inparanoid:20070104

Oryza gramene

  • Q7XE53 (score: 1.000; bootstrap: 94%)
  • Q84ST3 (score: 0.432)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000018482 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000028239 (score: 0.350)
  • ENSPTRP00000014407 (score: 0.340)
  • ENSPTRP00000010414 (score: 0.333)
  • ENSPTRP00000018498 (score: 0.289)
  • ENSPTRP00000010454 (score: 0.242)
  • ENSPTRP00000034884 (score: 0.156)
  • ENSPTRP00000014106 (score: 0.124)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000016919 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000014391 (score: 0.346)
  • ENSRNOP00000014317 (score: 0.345)
  • ENSRNOP00000025784 (score: 0.344)
  • ENSRNOP00000027117 (score: 0.343)
  • ENSRNOP00000019618 (score: 0.322)
  • ENSRNOP00000015205 (score: 0.308)
  • ENSRNOP00000032751 (score: 0.174)
  • ENSRNOP00000034589 (score: 0.131)
  • ENSRNOP00000040882 (score: 0.122)
  • ENSRNOP00000050128 (score: 0.108)
  • ENSRNOP00000008081 (score: 0.102)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGR055W (score: 1.000; bootstrap: 64%)
  • YHL036W (score: 0.122)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000141857 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000161608 (score: 0.652)
  • NEWSINFRUP00000168248 (score: 0.648)
  • NEWSINFRUP00000138436 (score: 0.552)
  • NEWSINFRUP00000136381 (score: 0.394)
  • NEWSINFRUP00000157525 (score: 0.389)
  • NEWSINFRUP00000139624 (score: 0.354)
  • NEWSINFRUP00000134225 (score: 0.338)
  • NEWSINFRUP00000167117 (score: 0.333)
  • NEWSINFRUP00000155388 (score: 0.332)
  • NEWSINFRUP00000143323 (score: 0.288)
  • NEWSINFRUP00000135572 (score: 0.223)
  • NEWSINFRUP00000129467 (score: 0.137)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014971001 (score: 1.000; bootstrap: 100%)
  • GSTENP00033009001 (score: 0.629)
  • GSTENP00019206001 (score: 0.567)
  • GSTENP00015157001 (score: 0.359)
  • GSTENP00022356001 (score: 0.346)
  • GSTENP00003512001 (score: 0.333)
  • GSTENP00008121001 (score: 0.297)
  • GSTENP00007787001 (score: 0.237)
  • GSTENP00016978001 (score: 0.203)
  • GSTENP00021514001 (score: 0.147)
  • GSTENP00002279001 (score: 0.140)
  • GSTENP00007560001 (score: 0.077)
  • GSTENP00025889001 (score: 0.075)
  • GSTENP00025888001 (score: 0.070)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000039600 (score: 1.000; bootstrap: 72%)
  • ENSXETP00000019534 (score: 0.420)
  • ENSXETP00000038474 (score: 0.385)
  • ENSXETP00000032004 (score: 0.324)
  • ENSXETP00000014625 (score: 0.323)
  • ENSXETP00000036177 (score: 0.317)
  • ENSXETP00000031952 (score: 0.310)
  • ENSXETP00000047864 (score: 0.302)
  • ENSXETP00000007227 (score: 0.293)
  • ENSXETP00000039618 (score: 0.274)
  • ENSXETP00000005757 (score: 0.158)

From Inparanoid:20070104

E. coli O157

YHFM

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00324


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Notes

Links

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Name URL Comments
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References

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