sodC:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00080 PFAM:PF00080]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00080 PFAM:PF00080]
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
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Revision as of 08:19, 6 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000015824 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000016164 (score: 0.390)
  • ENSANGP00000019828 (score: 0.059)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014324 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G08830 (score: 1.000; bootstrap: 100%)
  • AT2G28190 (score: 0.586)
  • AT5G18100 (score: 0.539)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000005683 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000032384 (score: 0.181)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031551 (score: 1.000; bootstrap: 100%)
  • WBGene00023778 (score: 0.300)
  • WBGene00032360 (score: 0.261)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004933 (score: 1.000; bootstrap: 100%)
  • WBGene00004930 (score: 0.260)
  • WBGene00007036 (score: 0.260)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000013012 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000024271 (score: 0.178)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000009704 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-990415-258 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-868 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191290 (score: 1.000; bootstrap: 100%)
  • DDB0188850 (score: 0.519)
  • DDB0232182 (score: 0.450)
  • DDB0205599 (score: 0.427)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0033631 (score: 1.000; bootstrap: 100%)
  • FBgn0003462 (score: 0.276)
  • FBgn0010531 (score: 0.161)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21488-PA (score: 1.000; bootstrap: 100%)
  • GA11202-PA (score: 0.268)
  • GA14646-PA (score: 0.171)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025499 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000023211 (score: 0.173)
  • ENSGALP00000028682 (score: 0.165)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000307870 (score: 1.000; bootstrap: 100%)
  • ENSP00000270142 (score: 0.166)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002283 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000003508 (score: 0.216)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000026310 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000010048 (score: 0.294)
  • ENSMODP00000000562 (score: 0.157)

From Inparanoid:20070104

Mus musculus

  • MGI:1333783 (score: 1.000; bootstrap: 100%)
  • MGI:98351 (score: 0.176)
  • MGI:3647296 (score: 0.174)

From Inparanoid:20070104

Oryza gramene

  • P93407 (score: 1.000; bootstrap: 100%)
  • Q6YYW6 (score: 1.000; bootstrap: 100%)
  • Q76MX3 (score: 1.000; bootstrap: 100%)
  • O24400 (score: 0.857)
  • Q93Y61 (score: 0.854)
  • Q96123 (score: 0.851)
  • P23345 (score: 0.449)
  • P23346 (score: 0.443)
  • Q4TUB3 (score: 0.434)
  • P28756 (score: 0.434)
  • P11428 (score: 0.431)
  • P28757 (score: 0.423)
  • P93801 (score: 0.423)
  • Q8LIB7 (score: 0.321)
  • P93800 (score: 0.309)
  • Q7M240 (score: 0.125)
  • Q5MJ23 (score: 0.111)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000006775 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000027474 (score: 0.060)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000026670 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000002885 (score: 0.171)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140559 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000157268 (score: 0.312)
  • NEWSINFRUP00000149073 (score: 0.056)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00018898001 (score: 1.000; bootstrap: 100%)
  • GSTENP00013149001 (score: 0.241)
  • GSTENP00023251001 (score: 0.134)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000015993 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000024940 (score: 0.216)
  • ENSXETP00000004537 (score: 0.177)

From Inparanoid:20070104

Shigella flexneri

SODC

From SHIGELLACYC

E. coli O157

SODC

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00080


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Notes

Links

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Name URL Comments
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References

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Categories

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