yihG:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418299&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418299&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:02, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014633 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010089 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000027260 (score: 0.512)
  • ENSBTAP00000006476 (score: 0.056)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000001094 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000015674 (score: 0.507)
  • ENSCAFP00000007923 (score: 0.072)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2430 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040426-2765 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3712 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3377 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2871 (score: 0.604)
  • ZDB-GENE-040426-1924 (score: 0.604)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0187976 (score: 1.000; bootstrap: 100%)
  • DDB0190609 (score: 0.156)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000018851 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000026077 (score: 0.657)
  • ENSGALP00000014726 (score: 0.092)
  • ENSGALP00000026290 (score: 0.063)
  • ENSGALP00000022423 (score: 0.057)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000310551 (score: 1.000; bootstrap: 100%)
  • ENSP00000285518 (score: 0.072)
  • ENSP00000332989 (score: 0.067)
  • ENSP00000314036 (score: 0.065)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024560 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000009585 (score: 0.469)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019371 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000008112 (score: 0.094)
  • ENSMODP00000026306 (score: 0.080)
  • ENSMODP00000015125 (score: 0.076)

From Inparanoid:20070104

Mus musculus

  • MGI:1196345 (score: 1.000; bootstrap: 100%)
  • MGI:2684937 (score: 0.066)
  • MGI:1915512 (score: 0.052)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000034182 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000037069 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000050960 (score: 0.064)
  • ENSRNOP00000024213 (score: 0.054)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR042C (score: 1.000; bootstrap: 100%)
  • YDR018C (score: 0.311)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134218 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000148221 (score: 0.573)
  • NEWSINFRUP00000149462 (score: 0.061)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00010213001 (score: 1.000; bootstrap: 100%)
  • GSTENP00030727001 (score: 0.486)
  • GSTENP00031987001 (score: 0.054)

From Inparanoid:20070104

Shigella flexneri

YIHG

From SHIGELLACYC

E. coli O157

YIHG

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF01553

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Notes

Links

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Name URL Comments
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References

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Categories

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