ubiB:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418279&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418279&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:59, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012457 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000009038 (score: 0.127)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000022834 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G71810 (score: 1.000; bootstrap: 90%)
  • AT1G79600 (score: 0.196)
  • AT3G24190 (score: 0.167)
  • AT5G24970 (score: 0.124)
  • AT4G31390 (score: 0.118)
  • AT2G39190 (score: 0.068)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000027295 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041642 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008410 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005861 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0216427 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0035039 (score: 1.000; bootstrap: 100%)
  • FBgn0036142 (score: 0.163)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17555-PA (score: 1.000; bootstrap: 100%)
  • GA20483-PA (score: 0.131)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000020947 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000072869 (score: 1.000; bootstrap: 84%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000020042 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017067 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Mus musculus

  • MGI:1889336 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Oryza gramene

  • Q69S79 (score: 1.000; bootstrap: 83%)
  • Q69S72 (score: 0.415)
  • Q6K2A4 (score: 0.260)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035408 (score: 1.000; bootstrap: 93%)
  • ENSPTRP00000011191 (score: 0.164)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000013277 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL109C (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC21C33 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134017 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00010642001 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044879 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YIGR

From SHIGELLACYC

E. coli O157

YIGR

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF03109

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Notes

Links

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Name URL Comments
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References

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Categories

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