rph:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418100&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418100&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:57, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000009222 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000017010 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000026025 (score: 0.101)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000019685 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000000301 (score: 0.065)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G61620 (score: 1.000; bootstrap: 100%)
  • AT4G27490 (score: 0.061)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000019451 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025010 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007201 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000002193 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000007456 (score: 0.054)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1702 (score: 1.000; bootstrap: 55%)
  • ZDB-CDNA-040425-2642 (score: 1.000; bootstrap: 55%)
  • ZDB-CDNA-050522-362 (score: 0.134)
  • ZDB-CDNA-050703-13 (score: 0.134)
  • ZDB-GENE-050522-362 (score: 0.134)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0183823 (score: 1.000; bootstrap: 100%)
  • DDB0185805 (score: 0.094)
  • DDB0216807 (score: 0.086)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000315476 (score: 1.000; bootstrap: 100%)
  • ENSP00000288063 (score: 0.112)
  • ENSP00000221233 (score: 0.067)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000009386 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000018844 (score: 0.059)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000013076 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1923576 (score: 1.000; bootstrap: 100%)
  • MGI:1919794 (score: 0.110)
  • MGI:107889 (score: 0.072)

From Inparanoid:20070104

Oryza gramene

  • Q6K293 (score: 1.000; bootstrap: 100%)
  • Q75LC8 (score: 0.080)
  • Q69UI6 (score: 0.080)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035368 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000014169 (score: 0.112)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000016464 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000025179 (score: 0.118)
  • ENSRNOP00000028026 (score: 0.061)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000015321 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPH

From SHIGELLACYC

E. coli O157

RPH

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF01138

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Notes

Links

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Name URL Comments
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References

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Categories

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