rhsA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418050&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418050&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:57, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000009783 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000039755 (score: 0.704)
  • ENSBTAP00000036826 (score: 0.689)
  • ENSBTAP00000018431 (score: 0.501)
  • ENSBTAP00000034908 (score: 0.091)
  • YP_026224 (score: 1.000; bootstrap: 100%)
  • YP_026234 (score: 0.073)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017541 (score: 1.000; bootstrap: 100%)
  • YP_026224 (score: 0.856)
  • YP_026234 (score: 0.086)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009228 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000005061 (score: 0.735)
  • ENSMODP00000005751 (score: 0.678)
  • ENSMODP00000018654 (score: 0.620)
  • YP_026224 (score: 1.000; bootstrap: 100%)
  • YP_026234 (score: 0.087)

From Inparanoid:20070104

Mus musculus

  • MGI:1345183 (score: 1.000; bootstrap: 100%)
  • MGI:2447063 (score: 0.698)
  • MGI:1345184 (score: 0.693)
  • MGI:1345185 (score: 0.609)
  • YP_026224 (score: 1.000; bootstrap: 100%)
  • YP_026234 (score: 0.080)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000003591 (score: 1.000; bootstrap: 69%)
  • YP_026224 (score: 0.848)

From Inparanoid:20070104

E. coli O157

RHSA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF05593

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Notes

Links

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Name URL Comments
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References

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