rpsJ:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417780&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417780&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:57, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016934 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000030339 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G13120 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000025484 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000006762 (score: 0.951)
  • ENSBTAP00000003555 (score: 0.681)
  • ENSBTAP00000026480 (score: 0.522)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000010471 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000007160 (score: 0.903)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000001547 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2284 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3231 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0218191 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0019936 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13894-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000023266 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000029265 (score: 0.348)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000009589 (score: 1.000; bootstrap: 100%)
  • ENSP00000348430 (score: 0.896)
  • ENSP00000352423 (score: 0.566)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000028078 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000013097 (score: 0.989)
  • ENSMMUP00000024255 (score: 0.978)
  • ENSMMUP00000024256 (score: 0.978)
  • ENSMMUP00000018001 (score: 0.538)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011366 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1914677 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000034700 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000042442 (score: 0.967)
  • ENSPTRP00000038906 (score: 0.571)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000049070 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000011314 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000047148 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000040180 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000043412 (score: 0.956)
  • ENSRNOP00000050051 (score: 0.945)
  • ENSRNOP00000042661 (score: 0.846)
  • ENSRNOP00000045964 (score: 0.824)
  • ENSRNOP00000051318 (score: 0.522)
  • ENSRNOP00000048919 (score: 0.511)
  • ENSRNOP00000041983 (score: 0.505)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR041W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC5769 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000138409 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000012475 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPSJ

From SHIGELLACYC

E. coli O157

RPSJ

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00338

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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Categories

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