panF:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417724&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417724&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:55, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011580 (score: 1.000; bootstrap: 69%)
  • ENSANGP00000011955 (score: 0.570)
  • ENSANGP00000023805 (score: 0.356)
  • ENSANGP00000010569 (score: 0.321)
  • ENSANGP00000002287 (score: 0.304)
  • ENSANGP00000019520 (score: 0.282)
  • ENSANGP00000012870 (score: 0.266)
  • ENSANGP00000019502 (score: 0.257)
  • ENSANGP00000022454 (score: 0.166)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000010240 (score: 1.000; bootstrap: 61%)
  • ENSAPMP00000007743 (score: 0.441)
  • ENSAPMP00000003219 (score: 0.295)
  • ENSAPMP00000007399 (score: 0.274)
  • ENSAPMP00000016151 (score: 0.167)
  • ENSAPMP00000032180 (score: 0.100)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028503 (score: 1.000; bootstrap: 56%)
  • WBGene00025216 (score: 0.060)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00014092 (score: 1.000; bootstrap: 57%)
  • WBGene00018716 (score: 0.056)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037895 (score: 1.000; bootstrap: 75%)
  • FBgn0035293 (score: 1.000; bootstrap: 73%)
  • FBgn0029950 (score: 0.471)
  • FBgn0051090 (score: 0.384)
  • FBgn0031998 (score: 0.315)
  • FBgn0017448 (score: 0.277)
  • FBgn0039872 (score: 0.253)
  • FBgn0039873 (score: 0.247)
  • FBgn0039394 (score: 0.245)
  • FBgn0053124 (score: 0.244)
  • FBgn0052669 (score: 0.219)
  • FBgn0034494 (score: 0.207)
  • FBgn0051668 (score: 0.190)
  • FBgn0051262 (score: 0.176)
  • FBgn0039391 (score: 0.167)
  • FBgn0039393 (score: 0.135)
  • FBgn0038652 (score: 0.116)
  • FBgn0039390 (score: 0.073)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21946-PA (score: 1.000; bootstrap: 65%)
  • GA21442-PA (score: 0.273)
  • GA15290-PA (score: 0.223)
  • GA17054-PA (score: 0.213)
  • GA21420-PA (score: 0.172)
  • GA20543-PA (score: 0.161)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC8693c (score: 1.000; bootstrap: 100%)
  • SPBPB8B62c (score: 0.454)
  • SPBC23G73c (score: 0.352)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000132536 (score: 1.000; bootstrap: 47%)
  • NEWSINFRUP00000139147 (score: 0.363)
  • NEWSINFRUP00000165007 (score: 0.340)
  • NEWSINFRUP00000165433 (score: 0.337)
  • NEWSINFRUP00000143770 (score: 0.303)
  • NEWSINFRUP00000181937 (score: 0.297)
  • NEWSINFRUP00000182500 (score: 0.262)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044878 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Shigella flexneri

PANF

From SHIGELLACYC

E. coli O157

PANF

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00474

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Notes

Links

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Name URL Comments
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References

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Categories

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