degS:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417702&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417702&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:50, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012547 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014738 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000026026 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000011042 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000004564 (score: 0.425)
  • ENSBTAP00000026804 (score: 0.313)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000018471 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000021445 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000008772 (score: 0.562)
  • ENSCAFP00000012325 (score: 0.385)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040704-64 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040704-64 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040801-245 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040801-260 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0038233 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21097-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025070 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000025068 (score: 0.468)
  • ENSGALP00000021805 (score: 0.218)
  • ENSGALP00000021600 (score: 0.070)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000303766 (score: 1.000; bootstrap: 100%)
  • ENSP00000299020 (score: 0.469)
  • ENSP00000305919 (score: 0.354)
  • ENSP00000258080 (score: 0.242)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000011963 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000029846 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000007924 (score: 0.437)
  • ENSMMUP00000002846 (score: 0.365)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003793 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000010233 (score: 0.456)
  • ENSMODP00000013256 (score: 0.338)
  • ENSMODP00000005932 (score: 0.220)

From Inparanoid:20070104

Mus musculus

  • MGI:3036260 (score: 1.000; bootstrap: 100%)
  • MGI:1929076 (score: 0.433)
  • MGI:1925808 (score: 0.355)
  • MGI:1928676 (score: 0.210)

From Inparanoid:20070104

Oryza gramene

  • Q6AUN5 (score: 1.000; bootstrap: 99%)
  • Q7XUW0 (score: 0.180)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000005327 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000020762 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000034549 (score: 0.395)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022166 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000027860 (score: 0.437)
  • ENSRNOP00000010852 (score: 0.341)
  • ENSRNOP00000030076 (score: 0.215)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL123W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC23G32c (score: 1.000; bootstrap: 100%)
  • SPBC16855 (score: 0.229)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000136976 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000160494 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000180577 (score: 0.579)
  • NEWSINFRUP00000170339 (score: 0.153)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022346001 (score: 1.000; bootstrap: 100%)
  • GSTENP00031557001 (score: 1.000; bootstrap: 100%)
  • GSTENP00006681001 (score: 0.425)
  • GSTENP00032214001 (score: 0.198)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000033992 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000033189 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000043887 (score: 0.435)

From Inparanoid:20070104

Shigella flexneri

DEGS

From SHIGELLACYC

E. coli O157

DEGS

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00089

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Notes

Links

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Name URL Comments
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References

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Categories

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