truB:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417635&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417635&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:58, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000017710 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G14460 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000017209 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037760 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010478 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000017180 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000009497 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050828-5 (score: 1.000; bootstrap: 77%)
  • ZDB-CDNA-050828-8 (score: 1.000; bootstrap: 77%)
  • ZDB-GENE-031118-120 (score: 0.968)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204297 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0023184 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014785 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000298746 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002541 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000012096 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Mus musculus

  • MGI:1919383 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Oryza gramene

  • Q94HL3 (score: 1.000; bootstrap: 97%)
  • Q65X25 (score: 1.000; bootstrap: 97%)
  • Q84ZW4 (score: 0.912)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000005235 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023309 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR175W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC29A44c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140014 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000051364 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Shigella flexneri

TRUB

From SHIGELLACYC

E. coli O157

TRUB

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF01509

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Notes

Links

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Name URL Comments
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References

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Categories

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