gpr:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417474&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417474&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:02, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000006086 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017335 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G04690 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000024576 (score: 1.000; bootstrap: 97%)
  • ENSBTAP00000010684 (score: 0.725)
  • ENSBTAP00000019888 (score: 0.450)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000028868 (score: 1.000; bootstrap: 98%)
  • ENSCAFP00000013013 (score: 0.584)
  • ENSCAFP00000024848 (score: 0.523)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005427 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050327-79 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-050327-79 (score: 1.000; bootstrap: 98%)
  • ZDB-CDNA-050612-257 (score: 0.671)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0001203 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17075-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000001339 (score: 1.000; bootstrap: 99%)
  • ENSGALP00000032335 (score: 0.607)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000340824 (score: 1.000; bootstrap: 99%)
  • ENSP00000273475 (score: 0.704)
  • ENSP00000302719 (score: 0.604)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000022317 (score: 1.000; bootstrap: 96%)
  • ENSMMUP00000022138 (score: 0.549)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019658 (score: 1.000; bootstrap: 99%)
  • ENSMODP00000007916 (score: 0.673)
  • ENSMODP00000009371 (score: 0.589)

From Inparanoid:20070104

Mus musculus

  • MGI:109239 (score: 1.000; bootstrap: 99%)
  • MGI:109155 (score: 0.734)
  • MGI:1336208 (score: 0.289)

From Inparanoid:20070104

Oryza gramene

  • Q6K697 (score: 1.000; bootstrap: 99%)
  • Q40648 (score: 0.744)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000014856 (score: 1.000; bootstrap: 99%)
  • ENSPTRP00000026786 (score: 1.000; bootstrap: 98%)
  • ENSPTRP00000044762 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000015840 (score: 1.000; bootstrap: 99%)
  • ENSRNOP00000051084 (score: 0.734)
  • ENSRNOP00000011523 (score: 0.595)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC9656 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000167043 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000159386 (score: 0.582)
  • NEWSINFRUP00000155538 (score: 0.582)
  • NEWSINFRUP00000133544 (score: 0.535)
  • NEWSINFRUP00000159387 (score: 0.376)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019063001 (score: 1.000; bootstrap: 99%)
  • GSTENP00003421001 (score: 0.393)
  • GSTENP00027578001 (score: 0.335)
  • GSTENP00028447001 (score: 0.149)
  • GSTENP00004469001 (score: 0.068)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000006343 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000019882 (score: 0.573)
  • ENSXETP00000026821 (score: 0.558)

From Inparanoid:20070104

Shigella flexneri

S3249

From SHIGELLACYC

E. coli O157

Z4354

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00248

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Notes

Links

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Name URL Comments
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References

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Categories

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