glcD:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417453&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417453&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:52, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012910 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000010393 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G06580 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008924 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031263 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009334 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000029772 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000008252 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-6140 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1443 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0202037 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0023507 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17719-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000010244 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000300051 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029029 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000018339 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Mus musculus

  • MGI:106428 (score: 1.000; bootstrap: 81%)

From Inparanoid:20070104

Oryza gramene

  • Q7XI14 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000014264 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000046399 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDL178W (score: 1.000; bootstrap: 100%)
  • YEL071W (score: 0.533)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC7133 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000129731 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00006177001 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000015277 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF01565

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Notes

Links

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Name URL Comments
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References

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Categories

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