ygfF:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417378&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417378&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:02, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000024539 (score: 1.000; bootstrap: 84%)
  • ENSANGP00000021339 (score: 0.550)
  • ENSANGP00000021120 (score: 0.378)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G03980 (score: 1.000; bootstrap: 96%)
  • AT3G04000 (score: 0.544)
  • AT5G18210 (score: 0.491)
  • AT4G13180 (score: 0.477)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00035307 (score: 1.000; bootstrap: 74%)
  • WBGene00035308 (score: 1.000; bootstrap: 53%)
  • WBGene00028617 (score: 0.174)
  • WBGene00028618 (score: 0.163)
  • WBGene00033128 (score: 0.153)
  • WBGene00033127 (score: 0.150)
  • WBGene00028619 (score: 0.142)
  • WBGene00033126 (score: 0.130)
  • WBGene00031245 (score: 0.116)
  • WBGene00041131 (score: 0.108)
  • WBGene00028621 (score: 0.100)
  • WBGene00028504 (score: 0.097)
  • WBGene00033125 (score: 0.097)
  • WBGene00039097 (score: 0.097)
  • WBGene00041130 (score: 0.095)
  • WBGene00028648 (score: 0.092)
  • WBGene00040923 (score: 0.089)
  • WBGene00031232 (score: 0.087)
  • WBGene00042377 (score: 0.087)
  • WBGene00033122 (score: 0.082)
  • WBGene00031193 (score: 0.079)
  • WBGene00040924 (score: 0.071)
  • WBGene00033120 (score: 0.071)
  • WBGene00033123 (score: 0.068)
  • WBGene00028201 (score: 0.062)
  • WBGene00028200 (score: 0.054)

From Inparanoid:20070104

Shigella flexneri

YGFF

From SHIGELLACYC

E. coli O157

Z4865

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00106

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Notes

Links

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Name URL Comments
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References

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