yfdV:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416873&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416873&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:01, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G23080 (score: 1.000; bootstrap: 100%)
  • AT1G70940 (score: 0.828)
  • AT2G01420 (score: 0.723)
  • AT1G73590 (score: 0.559)
  • AT5G57090 (score: 0.520)
  • AT1G77110 (score: 0.358)
  • AT5G15100 (score: 0.263)
  • AT5G16530 (score: 0.185)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000028831 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000019541 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000295500 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000027646 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011696 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1915776 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • O81215 (score: 1.000; bootstrap: 100%)
  • Q5SMQ9 (score: 1.000; bootstrap: 100%)
  • Q67UL3 (score: 0.844)
  • Q6RK61 (score: 0.792)
  • Q5VP70 (score: 0.578)
  • Q5VP71 (score: 0.572)
  • Q651V6 (score: 0.540)
  • Q6L5F6 (score: 0.425)
  • Q5JLM1 (score: 0.249)
  • Q6ZIB5 (score: 0.239)
  • Q5VQY3 (score: 0.104)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000021626 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143171 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000135971 (score: 0.513)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00031448001 (score: 1.000; bootstrap: 100%)
  • GSTENP00005430001 (score: 0.323)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000015032 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

E. coli O157

Z3635

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF03547

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Notes

Links

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Name URL Comments
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References

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Categories

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