rfbB:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416545&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416545&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:56, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000021860 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • YP_026255 (score: 1.000; bootstrap: 100%)
  • AT1G78570 (score: 1.000; bootstrap: 99%)
  • AT1G53500 (score: 1.000; bootstrap: 99%)
  • AT3G14790 (score: 0.895)
  • AT1G63000 (score: 0.233)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000006984 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.610)

From Inparanoid:20070104

Caenorhabditis briggsae

  • YP_026255 (score: 0.617)
  • WBGene00034706 (score: 1.000; bootstrap: 100%)
  • WBGene00026470 (score: 0.140)

From Inparanoid:20070104

Caenorhabditis elegans

  • YP_026255 (score: 0.618)
  • WBGene00018737 (score: 1.000; bootstrap: 100%)
  • WBGene00015298 (score: 0.125)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000007947 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.611)

From Inparanoid:20070104

Danio rerio

  • YP_026255 (score: 1.000; bootstrap: 99%)
  • ZDB-GENE-030131-5718 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1388 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1387 (score: 0.653)

From Inparanoid:20070104

Dictyostelium discoideum

  • YP_026255 (score: 1.000; bootstrap: 99%)
  • DDB0231748 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027264 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.608)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000261296 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.610)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000017161 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.647)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011711 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.610)

From Inparanoid:20070104

Mus musculus

  • MGI:1923605 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.604)

From Inparanoid:20070104

Oryza gramene

  • YP_026255 (score: 1.000; bootstrap: 100%)
  • Q6B6M1 (score: 1.000; bootstrap: 59%)
  • Q6B6L8 (score: 1.000; bootstrap: 52%)
  • Q8W3J1 (score: 0.907)
  • Q5QMG6 (score: 0.903)
  • Q6F3E9 (score: 0.819)
  • Q75PK7 (score: 0.787)
  • Q6B6L9 (score: 0.784)
  • Q6I683 (score: 0.778)
  • Q60E78 (score: 0.756)
  • Q75PK6 (score: 0.720)
  • Q8W3J0 (score: 0.540)
  • Q9FSE2 (score: 0.538)
  • Q6B6M0 (score: 0.532)
  • Q7XY21 (score: 0.531)
  • Q8W2F7 (score: 0.522)
  • Q5QMG5 (score: 0.317)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000010139 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.610)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000012925 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.605)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • YP_026255 (score: 0.645)
  • SPBPB2B21 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000157727 (score: 1.000; bootstrap: 98%)
  • YP_026255 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025956001 (score: 1.000; bootstrap: 100%)
  • GSTENP00000105001 (score: 0.057)
  • YP_026255 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000009242 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.340)

From Inparanoid:20070104

Shigella flexneri

RFBB

From SHIGELLACYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF01370

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Notes

Links

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Name URL Comments
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References

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Categories

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