SGD: Difference between revisions
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Revision as of 21:32, 1 August 2007
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| SGD | |
| Who: | Mike Cherry, Stanford Univ. |
| What: | Comprehensive data resource for S. cerevisiae (baker's yeast) |
| Where: | SGD |
| Updates | |
| Upcoming events | |
| Web Services | |
About SGD
SGD houses genetic and biological info about S. cerevisiae. It is the main genome database for Sacchromyces.
Content
Sequences of yeast genes and proteins
Descriptions and classifications of:
- biological roles
- molecular functions
- subcellular localizations
Links to:
- literature information
- functional genomics datasets
- tools for analysis and comparison of sequences
Using SGD
Browsing
Searching
Basic Searches:
- gene name, product, or description
- name of protein or protein complex
- GO terms
- GO IDs
- colleagues or authors
- biochemical pathways
- Pubmed ID
- gene summary paragraphs
- abstracts
- name descriptions
- phenotypes
- locus history notes
Advanced Searches:
- chromosomal feature (ORF, ARS, centromere, etc.)
- protein properties
- phenotypic properties
- interaction properties
- biological process
- molecular function
- cellular component
- results of a large-scale expression
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
Cherry JM, Ball C, Weng S, Juvik G, Schmidt R, Adler C, Dunn B, Dwight S, Riles L, Mortimer RK, Botstein D Nature 1997 387(6632 Suppl):67-73 Genetic and physical maps of Saccharomyces cerevisiae.