Revision as of 18:49, 29 August 2006

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SGD
Who:	Mike Cherry, Stanford Univ.
What:	Comprehensive data resource for S. cerevisiae (baker's yeast)
Where:	SGD
Updates
Upcoming events
Web Services

About SGD

SGD houses genetic and biological info about S. cerevisiae. It is the main genome database for Sacchromyces.

Content

Sequences of yeast genes and proteins

Descriptions and classifications of:

biological roles
molecular functions
subcellular localizations

Links to:

literature information
functional genomics datasets
tools for analysis and comparison of sequences

Using SGD

Browsing

Searching

Basic Searches:

gene name, product, or description
name of protein or protein complex
GO terms
GO IDs
colleagues or authors
biochemical pathways
Pubmed ID
gene summary paragraphs
abstracts
name descriptions
phenotypes
locus history notes

Advanced Searches:

chromosomal feature (ORF, ARS, centromere, etc.)
protein properties
phenotypic properties
interaction properties
biological process
molecular function
cellular component
results of a large-scale expression

Usage examples

Add links to additional pages describing success stories here.

Technology

Web Services/API

Discussion

Trackbacks

What are trackbacks? This feature is not yet functional

References

External Links

SGD

Discussion of SGD on other websites

@@ Line 43: / Line 43: @@
 ==Browsing==
 ==Searching==
-You may search by:
+Basic Searches:
 :* gene name, product, or description
 :* name of protein or protein complex
@@ Line 51: / Line 51: @@
 :* biochemical pathways
 :* Pubmed ID
+:* gene summary paragraphs
+:* abstracts
+:* name descriptions
+:* phenotypes
+:* locus history notes
+Advanced Searches:
+:* chromosomal feature (ORF, ARS, centromere, etc.)
+:* protein properties
-Sometimes you may need to investigate genes or proteins without knowing their names. You can search for a class of similarly named genes using the wildcard character (e.g., searching for 'pet*' brings up PET54, PET122, PET494...). Or, you can search with the name of a protein (e.g., profilin) or protein complex (e.g., cytochrome c oxidase), or a Gene Ontology term (see next section) to bring up lists of the Locus Pages where this text occurs. Each gene name in the hit list resulting from the search is hyperlinked to the corresponding Locus Page.
+:* phenotypic properties
+:* interaction properties
+:* biological process
+:* molecular function
+:* cellular component
+:* results of a large-scale expression
 ==Usage examples==

SGD: Difference between revisions