hdhA:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>WikiEntryBot
Automated import of articles
Edited by wikibot
Line 157: Line 157:
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416136&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416136&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:52, 14 November 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000030681 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G30670 (score: 1.000; bootstrap: 66%)
  • AT2G29330 (score: 0.751)
  • AT2G29320 (score: 0.733)
  • AT2G29340 (score: 0.725)
  • AT2G29310 (score: 0.723)
  • AT2G29300 (score: 0.720)
  • AT1G07440 (score: 0.596)
  • AT1G07450 (score: 0.557)
  • AT2G29360 (score: 0.536)
  • AT2G29290 (score: 0.531)
  • AT2G29350 (score: 0.523)
  • AT2G29150 (score: 0.495)
  • AT2G29370 (score: 0.490)
  • AT5G06060 (score: 0.482)
  • AT2G29260 (score: 0.461)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019987 (score: 1.000; bootstrap: 75%)
  • ENSCINP00000010325 (score: 0.069)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000014296 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000020810 (score: 1.000; bootstrap: 71%)
  • ENSMODP00000004520 (score: 1.000; bootstrap: 73%)
  • ENSMODP00000004616 (score: 0.429)
  • ENSMODP00000004553 (score: 0.422)
  • ENSMODP00000019429 (score: 0.057)
  • ENSMODP00000019424 (score: 0.052)

From Inparanoid:20070104

Oryza gramene

  • Q53KZ3 (score: 1.000; bootstrap: 56%)
  • Q53JM9 (score: 0.577)
  • Q84K74 (score: 0.394)
  • Q942W0 (score: 0.380)
  • Q942V9 (score: 0.378)
  • Q84Q70 (score: 0.362)
  • Q84JJ3 (score: 0.332)
  • Q7XL92 (score: 0.282)
  • Q53KL8 (score: 0.149)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000024782 (score: 1.000; bootstrap: 70%)
  • ENSRNOP00000024484 (score: 0.385)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC17398c (score: 1.000; bootstrap: 98%)
  • SPAC22A127c (score: 0.333)
  • SPAC8E110 (score: 0.185)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000137832 (score: 1.000; bootstrap: 78%)
  • NEWSINFRUP00000148738 (score: 0.126)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00005495001 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044336 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

E. coli O157

HDHA

From ECOO157CYC

edit table

See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Do-It-Yourself Web Tools


Notes

Families

[back to top]


Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00106

edit table

See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]


See Help:References for how to manage references in EcoliWiki.



Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=hdhA:Evolution&oldid=324120"