stfQ:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416065&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416065&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:00, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000038746 (score: 1.000; bootstrap: 51%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027418 (score: 1.000; bootstrap: 100%)
  • WBGene00027434 (score: 0.138)
  • WBGene00027431 (score: 0.127)
  • WBGene00027401 (score: 0.082)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00019540 (score: 1.000; bootstrap: 76%)
  • WBGene00008707 (score: 0.087)
  • WBGene00022649 (score: 0.086)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000690 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016155 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0189911 (score: 1.000; bootstrap: 93%)
  • DDB0185120 (score: 0.186)
  • DDB0203095 (score: 0.073)
  • DDB0168484 (score: 0.062)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000031553 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000322544 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003259 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Oryza gramene

  • Q6KA29 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR534C (score: 1.000; bootstrap: 95%)
  • YOR383C (score: 0.107)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBPJ46642 (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF07484

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Notes

Links

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Name URL Comments
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References

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