ybiR:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415339&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415339&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:00, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012276 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000023663 (score: 0.610)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000020766 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • YP_026175 (score: 0.284)
  • DDB0191323 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0041150 (score: 1.000; bootstrap: 100%)
  • FBgn0031649 (score: 0.321)
  • FBgn0036329 (score: 0.273)
  • FBgn0051693 (score: 0.194)
  • FBgn0035332 (score: 0.186)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11811-PA (score: 1.000; bootstrap: 100%)
  • GA13854-PA (score: 0.316)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000346659 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000015777 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • YP_026175 (score: 0.306)
  • Q6K6Z6 (score: 1.000; bootstrap: 100%)
  • Q7XDX5 (score: 1.000; bootstrap: 100%)
  • Q947Z0 (score: 0.788)
  • Q9AV23 (score: 0.475)
  • Q8H7R0 (score: 0.454)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020137001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YBIR

From SHIGELLACYC

E. coli O157

YBIR

From ECOO157CYC

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Do-It-Yourself Web Tools


Notes

Families

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012276 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000023663 (score: 0.610)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000020766 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • YP_026175 (score: 0.284)
  • DDB0191323 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0041150 (score: 1.000; bootstrap: 100%)
  • FBgn0031649 (score: 0.321)
  • FBgn0036329 (score: 0.273)
  • FBgn0051693 (score: 0.194)
  • FBgn0035332 (score: 0.186)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11811-PA (score: 1.000; bootstrap: 100%)
  • GA13854-PA (score: 0.316)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000346659 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000015777 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • YP_026175 (score: 0.306)
  • Q6K6Z6 (score: 1.000; bootstrap: 100%)
  • Q7XDX5 (score: 1.000; bootstrap: 100%)
  • Q947Z0 (score: 0.788)
  • Q9AV23 (score: 0.475)
  • Q8H7R0 (score: 0.454)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020137001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YBIR

From SHIGELLACYC

E. coli O157

YBIR

From ECOO157CYC

edit table

See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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Categories

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