amtB:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_414985&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_414985&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:49, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014231 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000006873 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G38290 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015012 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000007196 (score: 0.383)
  • ENSBTAP00000016227 (score: 0.319)
  • ENSBTAP00000001711 (score: 0.275)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00034965 (score: 1.000; bootstrap: 91%)
  • WBGene00034967 (score: 1.000; bootstrap: 91%)
  • WBGene00034968 (score: 0.644)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000136 (score: 1.000; bootstrap: 93%)
  • WBGene00000133 (score: 0.616)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003128 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000017563 (score: 0.505)
  • ENSCAFP00000024727 (score: 0.420)
  • ENSCAFP00000018961 (score: 0.250)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012012 (score: 1.000; bootstrap: 97%)
  • ENSCINP00000008302 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-8229 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-030131-9542 (score: 0.549)
  • ZDB-GENE-040426-2595 (score: 0.485)
  • ZDB-GENE-000427-1 (score: 0.397)
  • ZDB-CDNA-040425-1552 (score: 0.348)
  • ZDB-CDNA-040425-3542 (score: 0.330)
  • ZDB-GENE-051213-1 (score: 0.289)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185017 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0038309 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19641-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000268122 (score: 1.000; bootstrap: 100%)
  • ENSP00000274818 (score: 1.000; bootstrap: 100%)
  • ENSP00000255013 (score: 0.487)
  • ENSP00000331871 (score: 0.240)
  • ENSP00000294413 (score: 0.236)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029855 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000023615 (score: 0.483)
  • ENSMMUP00000015845 (score: 0.381)
  • ENSMMUP00000014601 (score: 0.144)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000023518 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000024393 (score: 0.478)
  • ENSMODP00000021054 (score: 0.463)
  • ENSMODP00000017480 (score: 0.282)

From Inparanoid:20070104

Mus musculus

  • MGI:1888517 (score: 1.000; bootstrap: 100%)
  • MGI:1927379 (score: 0.463)
  • MGI:1202713 (score: 0.376)
  • MGI:1202882 (score: 0.138)

From Inparanoid:20070104

Oryza gramene

  • Q6T8L6 (score: 1.000; bootstrap: 92%)
  • Q851M9 (score: 0.844)
  • Q84KJ6 (score: 0.713)
  • Q69T29 (score: 0.660)
  • Q84KJ7 (score: 0.575)
  • Q84K95 (score: 0.575)
  • Q8S233 (score: 0.575)
  • Q8S230 (score: 0.565)
  • Q8W300 (score: 0.089)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000012708 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000002466 (score: 0.463)
  • ENSPTRP00000031201 (score: 0.437)
  • ENSPTRP00000043652 (score: 0.087)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000021109 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000026396 (score: 0.466)
  • ENSRNOP00000040256 (score: 0.358)
  • ENSRNOP00000048811 (score: 0.358)
  • ENSRNOP00000023187 (score: 0.139)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL142W (score: 1.000; bootstrap: 100%)
  • YPR138C (score: 1.000; bootstrap: 100%)
  • YGR121C (score: 0.724)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCPB1C111 (score: 1.000; bootstrap: 100%)
  • SPAC6644 (score: 0.278)
  • SPAC2E1P32c (score: 0.116)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000177155 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000162837 (score: 0.436)
  • NEWSINFRUP00000161244 (score: 0.420)
  • NEWSINFRUP00000144294 (score: 0.392)
  • NEWSINFRUP00000164777 (score: 0.346)
  • NEWSINFRUP00000136949 (score: 0.083)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00006962001 (score: 1.000; bootstrap: 100%)
  • GSTENP00024318001 (score: 0.551)
  • GSTENP00018505001 (score: 0.505)
  • GSTENP00017669001 (score: 0.487)
  • GSTENP00022829001 (score: 0.467)
  • GSTENP00031388001 (score: 0.158)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000038537 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000043046 (score: 0.475)
  • ENSXETP00000024372 (score: 0.324)
  • ENSXETP00000026333 (score: 0.277)
  • ENSXETP00000007964 (score: 0.220)

From Inparanoid:20070104

Shigella flexneri

AMTB

From SHIGELLACYC

E. coli O157

AMTB

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00909

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Notes

Links

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Name URL Comments
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References

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