yajR:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_414961&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_414961&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:59, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016823 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000016935 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000002247 (score: 0.056)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00017861 (score: 1.000; bootstrap: 100%)
  • WBGene00010182 (score: 0.275)
  • WBGene00021814 (score: 0.256)
  • WBGene00010282 (score: 0.240)
  • WBGene00020888 (score: 0.191)
  • WBGene00013996 (score: 0.186)
  • WBGene00012280 (score: 0.181)
  • WBGene00020889 (score: 0.180)
  • WBGene00016095 (score: 0.158)
  • WBGene00016093 (score: 0.154)
  • WBGene00016094 (score: 0.143)
  • WBGene00018706 (score: 0.138)
  • WBGene00012170 (score: 0.137)
  • WBGene00008793 (score: 0.103)
  • WBGene00012222 (score: 0.098)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003396 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000029676 (score: 0.705)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019121 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050417-154 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050417-155 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028468 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19110-PA (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000010408 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000298472 (score: 1.000; bootstrap: 100%)
  • ENSP00000276373 (score: 0.630)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00028988001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

E. coli O157

YAJR

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF07690

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Notes

Links

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Name URL Comments
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References

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Categories

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