Database Overview: Difference between revisions
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*[[ASAP]] | *[[ASAP]] | ||
*[[GenoBase]] | *[[GenoBase]]: No | ||
*[[EcoCyc]] | *[[EcoCyc]] | ||
*[[EcoGene]] | *[[EcoGene]]: No | ||
*[[RegulonDB]] | *[[RegulonDB]] | ||
*[[KEGG]]: retrieves links to KEGG Pathway and KEGG GENES entries | *[[KEGG]]: retrieves links to KEGG Pathway and KEGG GENES entries | ||
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*[[ASAP]] | *[[ASAP]] | ||
*[[GenoBase]] | *[[GenoBase]]: No | ||
*[[EcoCyc]] | *[[EcoCyc]] | ||
*[[EcoGene]] | *[[EcoGene]]: No | ||
*[[RegulonDB]] | *[[RegulonDB]] | ||
|- | |- | ||
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*[[ASAP]] | *[[ASAP]] | ||
*[[GenoBase]] | *[[GenoBase]]: No | ||
*[[EcoCyc]] | *[[EcoCyc]] | ||
*[[EcoGene]] | *[[EcoGene]]: No | ||
*[[RegulonDB]] | *[[RegulonDB]] | ||
*[[KEGG]]: (no result) | *[[KEGG]]: (no result) | ||
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| | | | ||
*[[ASAP]] | *[[ASAP]] | ||
*[[GenoBase]] | *[[GenoBase]]: Yes | ||
*[[EcoCyc]] | *[[EcoCyc]] | ||
*[[EcoGene]] | *[[EcoGene]]: Yes | ||
*[[RegulonDB]] | *[[RegulonDB]] | ||
*[[KEGG]]: (no result) | *[[KEGG]]: (no result) | ||
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| | | | ||
*[[ASAP]] | *[[ASAP]] | ||
*[[GenoBase]] | *[[GenoBase]]: Yes | ||
*[[EcoCyc]] | *[[EcoCyc]] | ||
*[[EcoGene]] | *[[EcoGene]]: No | ||
*[[RegulonDB]] | *[[RegulonDB]] | ||
*[[KEGG]]: (no result) | *[[KEGG]]: (no result) | ||
| Line 249: | Line 249: | ||
| | | | ||
*[[ASAP]] | *[[ASAP]] | ||
*[[GenoBase]] | *[[GenoBase]]: No | ||
*[[EcoCyc]] | *[[EcoCyc]] | ||
*[[EcoGene]] | *[[EcoGene]]: Yes | ||
*[[RegulonDB]] | *[[RegulonDB]] | ||
*[[KEGG]]: (no result) | *[[KEGG]]: (no result) | ||
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| | | | ||
*[[ASAP]] | *[[ASAP]] | ||
*[[GenoBase]] | *[[GenoBase]]: No | ||
*[[EcoCyc]] | *[[EcoCyc]] | ||
*[[EcoGene]] | *[[EcoGene]]: No | ||
*[[RegulonDB]] | *[[RegulonDB]] | ||
*[[KEGG]]: (no result) | *[[KEGG]]: (no result) | ||
| Line 277: | Line 277: | ||
| | | | ||
*[[ASAP]] | *[[ASAP]] | ||
*[[GenoBase]] | *[[GenoBase]]: No | ||
*[[EcoCyc]] | *[[EcoCyc]] | ||
*[[EcoGene]] | *[[EcoGene]]: No | ||
*[[RegulonDB]] | *[[RegulonDB]] | ||
*[[KEGG]]: (no result) | *[[KEGG]]: (no result) | ||
| Line 287: | Line 287: | ||
| | | | ||
*[[ASAP]] | *[[ASAP]] | ||
*[[GenoBase]] | *[[GenoBase]]: No | ||
*[[EcoCyc]] | *[[EcoCyc]] | ||
*[[EcoGene]] | *[[EcoGene]]: No | ||
*[[RegulonDB]] | *[[RegulonDB]] | ||
*[[KEGG]]: (no result) | *[[KEGG]]: (no result) | ||
|} | |} | ||
Revision as of 19:42, 21 June 2006
Content & Features at different databases
Query types
Query by gene name
| Input | Output | How this is handled in different databases |
|---|---|---|
| gene name (e.g. lacY) | sequence | |
| description |
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function |
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localization |
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process (GO definitions ) |
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gene name (namespace1) |
gene name (namespace2) | |
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| gene name | pathway | |
| gene name | experimental data | |
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| gene name (species 1) | gene name( species 2) | |
| gene name |
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Query by pathway
| Input | Output | How this is handled in different databases |
|---|---|---|
| pathway |
|
|
| metabolic process |
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|
Query by DNA location or sequence
| Input | Output | How this is handled in different databases |
|---|---|---|
| DNA location | Gene name | |
| sequence | related sequence (BLAST) |
Query by Function
| Input | Output | How this is handled in different databases |
|---|---|---|
| gene function (GO term) same for process and other GO branches |
gene name |
Query by strain
| Input | Output | How this is handled in different databases |
|---|---|---|
| strain ID |
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